Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C03
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   138   3e-34
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   138   6e-34
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   6.7  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.9  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  138 bits (335), Expect = 3e-34
 Identities = 66/115 (57%), Positives = 88/115 (76%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPART 517
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R+
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERS 111


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  138 bits (333), Expect = 6e-34
 Identities = 66/114 (57%), Positives = 86/114 (75%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPAR 514
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRER 110


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 392 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 496
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 292 VRDLLEIWMFGCMVVFLSYHDSLLE 218
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,047
Number of Sequences: 5004
Number of extensions: 43985
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)