Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C03
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 140 8e-34
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 140 8e-34
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 133 7e-32
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.73
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.73
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 3.9
02_01_0462 + 3332464-3332470,3333606-3335806 27 6.8
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133 27 8.9
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 8.9
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 140 bits (338), Expect = 8e-34
Identities = 61/97 (62%), Positives = 82/97 (84%)
Frame = +2
Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 463
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 140 bits (338), Expect = 8e-34
Identities = 61/97 (62%), Positives = 82/97 (84%)
Frame = +2
Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 463
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 133 bits (322), Expect = 7e-32
Identities = 63/117 (53%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Frame = +2
Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPAR 514
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPR 116
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 510 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 406
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 203 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 379
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 380 TNEGIE-YLRIFLHLP 424
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +2
Query: 302 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 472
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 473 VR--RGA---VGRPDAPA 511
R +G+ + +P PA
Sbjct: 662 SRKYKGSLEYISQPSTPA 679
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 321 LNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 428
L +M RN +GGI I + V+ +L+ SC LL
Sbjct: 575 LQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
Length = 997
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 436 TSNPEE-VSAYRDSTSWCSWQA-*CSSTN 516
T NP + + ++ DST +CSW+ CSS N
Sbjct: 44 TLNPHQSLISWNDSTHFCSWEGISCSSKN 72
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 191 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 289
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,554
Number of Sequences: 37544
Number of extensions: 251770
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -