Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C03
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                165   1e-41
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       27   9.2  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   9.2  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  165 bits (402), Expect = 1e-41
 Identities = 75/103 (72%), Positives = 88/103 (85%), Gaps = 1/103 (0%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           ML+PK+NRV IYEYLFKEGV VAKKD+++PKH  +E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVR 478
            W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R
Sbjct: 61  CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETAR 103


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 492 PTAPRRTVSVRTDLFRVAGTISGG 421
           P    RTV++  D+F  AGT++GG
Sbjct: 464 PKVKTRTVTLEGDVFDPAGTLTGG 487


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 284 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 463
           I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 129 ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,095
Number of Sequences: 59808
Number of extensions: 305837
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)