Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C03
         (517 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14972-1|AAA85660.1|  165|Homo sapiens ribosomal protein S10 pro...   179   5e-45
BX255972-3|CAH73101.1|  172|Homo sapiens ribosomal protein S10 p...   179   5e-45
BX255972-2|CAH73100.1|  165|Homo sapiens ribosomal protein S10 p...   179   5e-45
BC073799-1|AAH73799.1|  165|Homo sapiens RPS10 protein protein.       179   5e-45
BC071946-1|AAH71946.1|  165|Homo sapiens ribosomal protein S10 p...   179   5e-45
BC070235-1|AAH70235.1|  165|Homo sapiens RPS10 protein protein.       179   5e-45
BC005012-1|AAH05012.1|  165|Homo sapiens RPS10 protein protein.       179   5e-45
BC001955-1|AAH01955.1|  165|Homo sapiens RPS10 protein protein.       179   5e-45
BC001032-1|AAH01032.1|  165|Homo sapiens ribosomal protein S10 p...   179   5e-45
AB209165-1|BAD92402.1|  174|Homo sapiens ribosomal protein S10 v...   177   2e-44
AB007151-1|BAA25817.1|   78|Homo sapiens ribosomal protein S10 p...   139   5e-33
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.           129   7e-30
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.               124   2e-28
BC030568-1|AAH30568.1|   72|Homo sapiens LOC376693 protein protein.    95   2e-19
U07149-1|AAA16958.1|  346|Homo sapiens retinal degeneration slow...    31   2.4  
M73531-1|AAA60260.1|  346|Homo sapiens retinal degeneration slow...    31   2.4  
BC074720-1|AAH74720.1|  346|Homo sapiens peripherin 2 (retinal d...    31   2.4  
AL049843-2|CAB75420.1|  346|Homo sapiens peripherin 2 (retinal d...    31   2.4  
AK126796-1|BAC86698.1|  195|Homo sapiens protein ( Homo sapiens ...    31   3.2  
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.     29   9.7  
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ...    29   9.7  
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr...    29   9.7  
M17367-1|AAA51741.1|  728|Homo sapiens APOB protein.                   29   9.7  
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.                   29   9.7  
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr...    29   9.7  
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu...    29   9.7  
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.              29   9.7  

>U14972-1|AAA85660.1|  165|Homo sapiens ribosomal protein S10
           protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BX255972-3|CAH73101.1|  172|Homo sapiens ribosomal protein S10
           protein.
          Length = 172

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BX255972-2|CAH73100.1|  165|Homo sapiens ribosomal protein S10
           protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC073799-1|AAH73799.1|  165|Homo sapiens RPS10 protein protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC071946-1|AAH71946.1|  165|Homo sapiens ribosomal protein S10
           protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC070235-1|AAH70235.1|  165|Homo sapiens RPS10 protein protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC005012-1|AAH05012.1|  165|Homo sapiens RPS10 protein protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC001955-1|AAH01955.1|  165|Homo sapiens RPS10 protein protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>BC001032-1|AAH01032.1|  165|Homo sapiens ribosomal protein S10
           protein.
          Length = 165

 Score =  179 bits (436), Expect = 5e-45
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 347 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R    G   + PAR
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116


>AB209165-1|BAD92402.1|  174|Homo sapiens ribosomal protein S10
           variant protein.
          Length = 174

 Score =  177 bits (431), Expect = 2e-44
 Identities = 86/118 (72%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
 Frame = +2

Query: 170 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVK 343
           +MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVK
Sbjct: 9   QMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVK 68

Query: 344 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPA L+RS R ET R    G   + PAR
Sbjct: 69  EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRS-RPETGRPRPKGLEGERPAR 125


>AB007151-1|BAA25817.1|   78|Homo sapiens ribosomal protein S10
           protein.
          Length = 78

 Score =  139 bits (337), Expect = 5e-33
 Identities = 62/78 (79%), Positives = 70/78 (89%), Gaps = 2/78 (2%)
 Frame = +2

Query: 194 RVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKEQFAWRHF 367
           R++IYE LFKEGVMVAKKD H PKHP+L  + +PNL V+KAMQSLKSRGYVKEQFAWRHF
Sbjct: 1   RIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHF 60

Query: 368 YWYLTNEGIEYLRIFLHL 421
           YWYLTNEGI+YLR +LHL
Sbjct: 61  YWYLTNEGIQYLRDYLHL 78


>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
          Length = 4684

 Score =  129 bits (311), Expect = 7e-30
 Identities = 60/95 (63%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 349
           MLMP+    +IYE LF+EGVMVAKKD      HP +  + NLQV++AM SL++RG V+E 
Sbjct: 5   MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64

Query: 350 FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKR 454
           FAW HFYWYLTNEGI +LR +LHLPPEIVPA+L+R
Sbjct: 65  FAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQR 99


>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
          Length = 4684

 Score =  124 bits (299), Expect = 2e-28
 Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 349
           MLMP+    +IYE LF+EGVMVAKKD      HP +  + NLQV++AM SL++RG V+E 
Sbjct: 5   MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64

Query: 350 FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKR 454
           FAW HF+WYLTNEGI +LR +LHLPPEIV A+L+R
Sbjct: 65  FAWCHFFWYLTNEGIAHLRQYLHLPPEIVAASLQR 99


>BC030568-1|AAH30568.1|   72|Homo sapiens LOC376693 protein protein.
          Length = 72

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 2/60 (3%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 346
           MLMPK+N ++IYE LFKEGVMVAKKD H PKHP+L  +  PNL+V+KAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNWIAIYELLFKEGVMVAKKDVHMPKHPELADKNAPNLRVMKAMQSLKSRGYVKE 60


>U07149-1|AAA16958.1|  346|Homo sapiens retinal degeneration slow
           protein protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 313 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 182
           +S+DH    + L +W+ GC    LSY+ SL+  + +   T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273


>M73531-1|AAA60260.1|  346|Homo sapiens retinal degeneration slow
           protein protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 313 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 182
           +S+DH    + L +W+ GC    LSY+ SL+  + +   T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273


>BC074720-1|AAH74720.1|  346|Homo sapiens peripherin 2 (retinal
           degeneration, slow) protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 313 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 182
           +S+DH    + L +W+ GC    LSY+ SL+  + +   T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273


>AL049843-2|CAB75420.1|  346|Homo sapiens peripherin 2 (retinal
           degeneration, slow) protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 313 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 182
           +S+DH    + L +W+ GC    LSY+ SL+  + +   T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273


>AK126796-1|BAC86698.1|  195|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44846 fis, clone BRACE3051144. ).
          Length = 195

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2

Query: 264 LGAW*SFLATMTPSLKRYS 208
           LG W  FLAT+TPSLKR S
Sbjct: 177 LGRWTFFLATVTPSLKRSS 195


>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
          Length = 4560

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1830 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1867


>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
            apolipoprotein B-100. ).
          Length = 4563

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870


>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
            B-100 (apoB) gene, exons 22 through 29. ).
          Length = 4563

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870


>M17367-1|AAA51741.1|  728|Homo sapiens APOB protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
           ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 163 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 200


>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
          Length = 3262

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
           ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 552 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 589


>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
            B-100 mRNA, complete cds. ).
          Length = 4563

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870


>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
            Ag(x) antigen) protein.
          Length = 4563

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870


>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
          Length = 3929

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 485  HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 372
            ++++  +YA++S+ L   ++  +  K  G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,223,546
Number of Sequences: 237096
Number of extensions: 1504304
Number of successful extensions: 2546
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2532
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)