Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C03
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   140   4e-34
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   136   1e-32
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   132   1e-31
At5g36210.1 68418.m04365 expressed protein                             29   1.4  
At1g16370.1 68414.m01958 transporter-related low similarity to o...    27   7.5  
At2g18870.1 68415.m02200 hypothetical protein contains 1 transme...    27   9.9  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  140 bits (340), Expect = 4e-34
 Identities = 65/115 (56%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           M++ + NR  I +YLFKEGV+ AKKD++ P+HP +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 514
           AW H+YW+LTNEGI++LR +L+LP EIVPATLK+  +      G  G RP  P R
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPR 115


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  136 bits (328), Expect = 1e-32
 Identities = 59/97 (60%), Positives = 79/97 (81%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           M++ + NR  I +YLFKEGV  AKKD++ PKHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 463
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  132 bits (320), Expect = 1e-31
 Identities = 58/97 (59%), Positives = 78/97 (80%)
 Frame = +2

Query: 173 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 352
           M++ + NR  I +YLFKEGV  AKKD++  KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 353 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 463
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 ILVFSWLS-KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKH 268
           I++F  L  K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 594 IILFQGLEDKVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At1g16370.1 68414.m01958 transporter-related low similarity to
           organic cation transporter OCTN1 from [Homo sapiens]
           GI:2605501, [Mus musculus] GI:4126605, [Rattus
           norvegicus] GI:5679326; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 521

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 269 PDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHL 421
           P    IP    +    SL    ++ +  +WR+ Y Y +   + Y  IFL+L
Sbjct: 210 PRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYC-IFLYL 259


>At2g18870.1 68415.m02200 hypothetical protein contains 1
           transmembrane domain; tandem duplication of fibronectin
           type III domain protein (GI:3004551)
           (TIGR_Ath1:At2g18880) [Arabidopsis thaliana]
          Length = 239

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 245 KDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWY 376
           K   A K+P+   +   Q +K ++ L+  GYV+  F  +   W+
Sbjct: 129 KPEKAKKNPESYGLGLEQCVKIIRKLECSGYVESTFRQKFLTWF 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,307
Number of Sequences: 28952
Number of extensions: 215045
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)