Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C01
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   2.2  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   2.9  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   3.9  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   5.1  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   6.7  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    24   8.9  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    24   8.9  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 285  WTRAGSKSVTVAPIRSATDRYHGGLRSR 368
            W+R+G+ +  +A I    DR+H G+  R
Sbjct: 1268 WSRSGAPTSVLAKIYDLVDRHHTGVLGR 1295


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 80  GSSEENSDPNPDKYFNSAISRNKRDS 3
           GSS +N + NP+  F+SA  R+ R S
Sbjct: 194 GSSTDNVEANPNTGFSSARKRSLRSS 219


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 FTAPRHDNKRSWLYRIRPSVVHKPFKKLNIAKHFTH 276
           F A RH N+R W +     +  + F   +IA+H  H
Sbjct: 9   FDAIRHANQRRWCHECTIKIFRRSF---DIARHTVH 41


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 241 FKKLN-IAKHFTHNWDGQEPDPNQSR 315
           FKK   +   +T  WD  E DPN+ R
Sbjct: 490 FKKYRGLRSLYTSQWDADEYDPNEPR 515


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 166 LCPTAVPRKAHTDNVAGYFVQQVERWAFEDLQRKIPIRI 50
           L PT V  +A  D  A  F++ ++ + F  +  K+P  +
Sbjct: 59  LKPTVVSLQAGVDKEADSFLEMMKTYIFSLVSMKVPFTV 97


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 226 VVHKPFKKLNIAKHFTHNWDGQEP 297
           ++H+    L +AKH +HN+  + P
Sbjct: 495 LIHEYHIPLRLAKHLSHNYGSRAP 518


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 145 AEQLSGTAFTAPR-HDNKRSWLYRIRPSVVHKPFKK 249
           ++ +   ++T P+   NKRS +  +RPSV H    K
Sbjct: 500 SKHVKSWSYTIPKPFVNKRSKVLPLRPSVTHDNLSK 535


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
 Frame = -1

Query: 245 LNGLWTTEGRILYNHERLLSCRGA----VNAVPDSCSA*SPYGQRCGLFCPTGRALGFRG 78
           L+GL+ T+ ++L  +E  L   G     VN         SP     G F      L    
Sbjct: 283 LSGLFPTDEKLLAWYEDRLKFLGPNHPRVNRETLDAIKASPILADEGAFYAKHLILDLST 342

Query: 77  SSEENSDPNPDKYFNSAISRNKRD 6
            S   S PN  K +NSA +  K+D
Sbjct: 343 LSPAVSGPNSVKVYNSAATLEKKD 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,943
Number of Sequences: 5004
Number of extensions: 47146
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)