Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C01
(437 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56755| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 5e-30
SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09) 31 0.42
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_11109| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.73
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6) 29 1.3
SB_49444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021) 28 2.9
SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016) 28 3.9
SB_40367| Best HMM Match : ECH (HMM E-Value=3.3) 27 5.1
SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2) 27 5.1
SB_36941| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_42226| Best HMM Match : efhand (HMM E-Value=0.25) 27 5.1
SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_53245| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 27 6.8
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52) 27 8.9
SB_21795| Best HMM Match : Pox_A_type_inc (HMM E-Value=6) 27 8.9
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 27 8.9
>SB_56755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 127 bits (306), Expect = 5e-30
Identities = 54/78 (69%), Positives = 61/78 (78%)
Frame = +1
Query: 199 SWLYRIRPSVVHKPFKKLNIAKHFTHNWDGQEPDPNQSRWLPFDLPPTGTTVDFVAGLHT 378
SWLYRIRPSV+H+PFK + + TH+W G EPDPNQ RW PFDLPP VDFV GL T
Sbjct: 9 SWLYRIRPSVIHQPFKPIPQG-NLTHDWKGAEPDPNQMRWKPFDLPPASDNVDFVQGLST 67
Query: 379 VCGAGDPRSRHGIAIHVY 432
VCGAGDP SRHGIAIH++
Sbjct: 68 VCGAGDPCSRHGIAIHIF 85
>SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09)
Length = 386
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 254 TLPNISLTIGMDKSRIQISHGGSHSICHRPVPRWTS*PAYT 376
TL N+ IG+ S ++ G + RP PRW+S Y+
Sbjct: 248 TLENVRELIGLTGSNVKALSPGDPLVLERPPPRWSSNSPYS 288
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 1 CESRLFRDMAELKYLSGFGSEFSSEDPRKPNALPVGQN 114
C S F D L Y+SG GS + D R +P +N
Sbjct: 283 CPSHGFNDFGGLGYISGCGSPYGGTDVRDSAKMPCSRN 320
>SB_11109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 30.3 bits (65), Expect = 0.73
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Frame = +2
Query: 44 YRDSDRNFPLKILESPTLYLLDKITRNVVRMGFTRNSCRAQR----SLLHGMTINARGYI 211
+ + D + L+I ES Y +I R+ + G R R + S + T + +GY
Sbjct: 45 FGEGDSLYALEIQESLVGYCCRRIKRDFKKRGRQRRRRRQKTMEFDSEFNNTTPHLQGYF 104
Query: 212 GYDLPWSTNHSKS*TLPNISLTIGMDKSRIQISHGGSHSICHRPVPR--WTS*------- 364
YD S + + L + + I +D+ I + HG S + +PR W
Sbjct: 105 -YDFTESYCNERG-RLKSHATEI-LDQKNIAVCHGNSDPLKSHALPRKFWPPKVRALPRK 161
Query: 365 --PAYTLCVAPEILAP 406
P T C+A EILAP
Sbjct: 162 FCPPKTSCLATEILAP 177
>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
Length = 594
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 187 DNKRSWLYRIRPSVVHKPFKKLNIAKHFTHNWDGQEPDPNQSRWLPFDLPPTG 345
D+K L R RP H K++ + + +THN+D +EP + + W D+ P G
Sbjct: 344 DDKEGIL-RYRPPK-HDHLKEMYVTQ-YTHNFDSEEPKSHIAGW-KVDVEPNG 392
>SB_49444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 311 HGGSHSICHRPVPR--WTS*PAYTLCVAPEILAP 406
HG S HR +PR W P T C+A EILAP
Sbjct: 22 HGNSGPKKHRALPRKFW---PPKTSCLATEILAP 52
>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
Length = 567
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 HGMTINARG-YIGYDLPWSTNHSKS*TLPNISLTIGMDKSRIQIS 310
+ + RG Y Y+ WST HS+S + NIS +D + + ++
Sbjct: 360 YASVLRMRGQYASYEWTWSTLHSQSHSTHNISTVAVIDGANLLLT 404
>SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016)
Length = 628
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 62 NFPLKILESPTLYLLDKITRNVVRMGFTRNSCRAQRSLLHGMTINARGYIGYDLPWSTNH 241
++ + + S Y D +TR V+R G S R L G + + GY + W
Sbjct: 228 SYDVDCVASKASYDGDCVTRYVIRWGLEGKSSHMMRIALQGTSYDGYCITGYVIRWGLQG 287
Query: 242 SKS 250
S
Sbjct: 288 KSS 290
>SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)
Length = 231
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 272 LTIGMDKSRIQISHGGS-HSICHRP--VPRWTS*PAYTLCVAPEILAPVTAS 418
L GM +S+I+ H S H C RW P+ + V ++APVTA+
Sbjct: 46 LLSGMWRSKIRYRHNTSQHQCCPNKELCTRWRKQPSIIVRVHDLLMAPVTAN 97
>SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)
Length = 430
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 97 LPVGQNNPQRCPYGLYAEQLSGTAFTAPRHDNKRSWLYRIRPSV 228
LP G RC G E GT A + SW Y++RPS+
Sbjct: 33 LPGGGGYTARCLKGRKHE---GTELAAVNEEVGESWRYQLRPSI 73
>SB_36941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = +2
Query: 263 NISLTIGMD-----KSRIQISHG---GSHSICHRPVPRWTS*PAYT 376
N+SL I +D K R+++S+ G + RP PRW+S Y+
Sbjct: 4 NVSLLIAVDQPESSKDRLELSNSCSPGDPLVLERPPPRWSSNSPYS 49
>SB_42226| Best HMM Match : efhand (HMM E-Value=0.25)
Length = 550
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 395 SPAPHTVCKPATKSTVVPVGGRSNGSHRD*FGSGS 291
S A ++ P + + P+ N SHR FGSGS
Sbjct: 97 STASYSTPVPNSPKVLPPIRREENSSHRPDFGSGS 131
>SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 286 GQEPDPNQSRWLPFDLPPTG 345
GQ PN +RW P+ LPP G
Sbjct: 501 GQNTYPNNARWTPY-LPPFG 519
>SB_53245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 254 TLPNISLTIGMDKSRIQISHGGSHSICHRPVPRWTS*PAYT 376
TL + ++TI +D G + RP PRW+S Y+
Sbjct: 7 TLISANITIDIDHKGSNSCSPGDPLVLERPPPRWSSNSPYS 47
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 296 RIQISHGGSHSICHRPVPRWTS*PAYT 376
+I + G+H + RP PRW+S Y+
Sbjct: 1071 QIPFTPDGTHLVLERPPPRWSSNSPYS 1097
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 187 DNKRSWLYRIRPSVVHKPFKKLNI 258
D + W + V HKP KK+NI
Sbjct: 566 DTQAPWQQTVDKKVFHKPMKKMNI 589
>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
Length = 721
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 83 RGSSEENSDPNPDKYFNSAISRNKR 9
R S N+ P PDK+ + + S++KR
Sbjct: 218 RSKSTPNAPPRPDKWTSKSASKSKR 242
>SB_21795| Best HMM Match : Pox_A_type_inc (HMM E-Value=6)
Length = 158
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 74 SEENSDPNPDKYFNSAISRNKRD 6
+ +N PNP YFN I+ N D
Sbjct: 50 NSQNKTPNPGFYFNELIANNVTD 72
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 393 SGATHSV*AGYEVHRGTGRWQIEWE 319
SG+ V + +VHR + WQ+ WE
Sbjct: 489 SGSARLVRSDSDVHRYSALWQVTWE 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,973
Number of Sequences: 59808
Number of extensions: 384518
Number of successful extensions: 2542
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2540
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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