Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B24
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   0.59 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   1.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    24   3.1  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    23   4.2  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    23   5.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    23   7.3  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    22   9.6  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 113 YMSTILVPNSXQPXGIHXVLRAAAY 39
           Y +TIL+P S     +H  +R AAY
Sbjct: 74  YGNTILLPASTSKLDVHRTIRYAAY 98


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 120 AVFYFTIFYTLIIYFMSFYFLLIIKKY 200
           +VFY ++FY L+  F+  ++L+  +K+
Sbjct: 188 SVFYASVFYILLGVFIRVFYLVNKEKF 214


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 118 QFTCPQSSCRIPC 80
           QF CP+ +C I C
Sbjct: 170 QFNCPEDACDITC 182


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 137 CEIKNRSIYMSTILVPNSXQPXGIHXVLRA 48
           CE+++RSIY +T        P G+   + A
Sbjct: 468 CEVEDRSIYTTTDAEQKLVTPEGLQEKIDA 497


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 95  RGLWTCKLSGFLF 133
           R +  CKLSGFLF
Sbjct: 620 RQIQVCKLSGFLF 632


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 102 CGHVN*AVFYFTIFYTLIIYFMSFYFLLIIKKYLVFF 212
           CG V   +FYF+  Y   I + S Y +  + K + FF
Sbjct: 74  CGIVTLLLFYFSGLYRTTIVYPSRY-VQQVNKAMRFF 109


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 156 IYFMSFYFLLIIKKYLVF 209
           +YF SFYFL ++    V+
Sbjct: 1   MYFQSFYFLALLLATAVY 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,480
Number of Sequences: 5004
Number of extensions: 11337
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)