Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B24
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0500 + 3584743-3585516                                           30   0.29 
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    29   0.39 
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467...    29   0.68 
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    27   2.7  
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646...    26   4.8  
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    25   8.3  

>06_01_0500 + 3584743-3585516
          Length = 257

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  VGGRSKNXVDPPGLXGIRHEDCGH 110
           +GG ++  VD PGL G R  D GH
Sbjct: 135 IGGGARGAVDAPGLIGDRFLDSGH 158


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 120 AVFYFTIFYTLIIYFMSFYFL 182
           AV YFT+F  LI YFMSFY +
Sbjct: 134 AVTYFTVFL-LINYFMSFYII 153


>01_06_0246 +
           27845898-27846001,27846235-27846237,27846472-27846700,
           27846814-27846968,27847091-27847136,27847233-27847324,
           27847425-27847521,27847649-27847705,27847799-27847927
          Length = 303

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 120 AVFYFTIFYTLIIYFMSFYFL 182
           AV YFT+F  LI YFMSFY +
Sbjct: 107 AVPYFTVFL-LINYFMSFYII 126


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 118 QFTCPQSSCRIPCSPGGST*FLERPPTAXWSS 23
           Q TCP ++CR P  P      L     A W S
Sbjct: 197 QLTCPDTNCRSPLPPSLLKSLLRDDGYAQWES 228


>02_05_0391 +
           28563242-28563302,28563714-28563931,28564563-28564637,
           28564730-28565264,28565343-28565523,28565586-28565724,
           28565826-28566067,28566157-28566322,28566591-28566698
          Length = 574

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 121 AQFTCPQSSCRIPCSP 74
           A+ TCP +SCR P  P
Sbjct: 328 ARLTCPDTSCRRPLPP 343


>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 123  VFYFTIFYTLIIYFMSFYFLLIIKKYLVFF 212
            VF  T +YTLI+Y M  +     K +  FF
Sbjct: 972  VFVQTAYYTLIVYAMMSFQWTAAKFFWFFF 1001


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,255,558
Number of Sequences: 37544
Number of extensions: 76781
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)