Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B24
         (214 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY141972-1|AAN10255.1| 1738|Homo sapiens putative 4 repeat volta...    31   0.51 
AL356778-1|CAI16648.1| 1738|Homo sapiens voltage gated channel l...    31   0.51 
AL354891-1|CAH73919.1| 1738|Homo sapiens voltage gated channel l...    31   0.51 
AL138707-1|CAI40711.1| 1738|Homo sapiens voltage gated channel l...    31   0.51 
D83597-1|BAA12019.1|  661|Homo sapiens RP105 protein.                  29   2.1  
BC109070-1|AAI09071.1|  661|Homo sapiens CD180 molecule protein.       29   2.1  
BC109069-1|AAI09070.1|  661|Homo sapiens CD180 molecule protein.       29   2.1  

>AY141972-1|AAN10255.1| 1738|Homo sapiens putative 4 repeat
            voltage-gated ion channel protein.
          Length = 1738

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99   DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
            DCG+   A+ YF  FY +I Y M +    +I++ + +F+
Sbjct: 1416 DCGNYAGALMYFCSFYVIIAYIMLNLLVAIIVENFSLFY 1454


>AL356778-1|CAI16648.1| 1738|Homo sapiens voltage gated channel like 1
            protein.
          Length = 1738

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99   DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
            DCG+   A+ YF  FY +I Y M +    +I++ + +F+
Sbjct: 1416 DCGNYAGALMYFCSFYVIIAYIMLNLLVAIIVENFSLFY 1454


>AL354891-1|CAH73919.1| 1738|Homo sapiens voltage gated channel like 1
            protein.
          Length = 1738

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99   DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
            DCG+   A+ YF  FY +I Y M +    +I++ + +F+
Sbjct: 1416 DCGNYAGALMYFCSFYVIIAYIMLNLLVAIIVENFSLFY 1454


>AL138707-1|CAI40711.1| 1738|Homo sapiens voltage gated channel like 1
            protein.
          Length = 1738

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99   DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
            DCG+   A+ YF  FY +I Y M +    +I++ + +F+
Sbjct: 1416 DCGNYAGALMYFCSFYVIIAYIMLNLLVAIIVENFSLFY 1454


>D83597-1|BAA12019.1|  661|Homo sapiens RP105 protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 18  KLELHXAVGGRSKNXVDPPGLXGIRHED----CGHVN*AVFYFTIFYTL--IIYFMSFYF 179
           K  LH   G       +PP L G++  D    CG     +F+  +F  L  I+ F +  +
Sbjct: 593 KENLHKLEGSEETTCANPPSLRGVKLSDVKLSCGITAIGIFFLIVFLLLLAILLFFAVKY 652

Query: 180 LL 185
           LL
Sbjct: 653 LL 654


>BC109070-1|AAI09071.1|  661|Homo sapiens CD180 molecule protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 18  KLELHXAVGGRSKNXVDPPGLXGIRHED----CGHVN*AVFYFTIFYTL--IIYFMSFYF 179
           K  LH   G       +PP L G++  D    CG     +F+  +F  L  I+ F +  +
Sbjct: 593 KENLHKLEGSEETTCANPPSLRGVKLSDVKLSCGITAIGIFFLIVFLLLLAILLFFAVKY 652

Query: 180 LL 185
           LL
Sbjct: 653 LL 654


>BC109069-1|AAI09070.1|  661|Homo sapiens CD180 molecule protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 18  KLELHXAVGGRSKNXVDPPGLXGIRHED----CGHVN*AVFYFTIFYTL--IIYFMSFYF 179
           K  LH   G       +PP L G++  D    CG     +F+  +F  L  I+ F +  +
Sbjct: 593 KENLHKLEGSEETTCANPPSLRGVKLSDVKLSCGITAIGIFFLIVFLLLLAILLFFAVKY 652

Query: 180 LL 185
           LL
Sbjct: 653 LL 654


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,227,489
Number of Sequences: 237096
Number of extensions: 446681
Number of successful extensions: 4878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4874
length of database: 76,859,062
effective HSP length: 49
effective length of database: 65,241,358
effective search space used: 1370068518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)