Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B24
(214 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 29 0.34
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 29 0.34
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 29 0.34
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 29 0.45
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 29 0.45
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 29 0.45
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 0.45
Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical p... 28 0.79
Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical pr... 28 1.0
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 1.0
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical p... 27 2.4
Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical pr... 25 7.3
U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine rece... 25 7.3
AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 25 9.7
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 25 9.7
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 29.5 bits (63), Expect = 0.34
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 PGLXGIRHEDCGHVN*AVFYFTIFYTLIIYF-MSFYFLLIIKKYLVFF 212
PGL DCG+ A+ YF FY +I Y ++ +I++ + +F+
Sbjct: 1468 PGLS-YWQTDCGNYVGAIVYFCSFYLIITYIVLNLLVAIIMENFSLFY 1514
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 29.5 bits (63), Expect = 0.34
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 PGLXGIRHEDCGHVN*AVFYFTIFYTLIIYF-MSFYFLLIIKKYLVFF 212
PGL DCG+ A+ YF FY +I Y ++ +I++ + +F+
Sbjct: 1446 PGLS-YWQTDCGNYVGAIVYFCSFYLIITYIVLNLLVAIIMENFSLFY 1492
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 29.5 bits (63), Expect = 0.34
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 PGLXGIRHEDCGHVN*AVFYFTIFYTLIIYF-MSFYFLLIIKKYLVFF 212
PGL DCG+ A+ YF FY +I Y ++ +I++ + +F+
Sbjct: 1468 PGLS-YWQTDCGNYVGAIVYFCSFYLIITYIVLNLLVAIIMENFSLFY 1514
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
DCG+ A+ YF FY +I Y + + +I++ + +F+
Sbjct: 1422 DCGNFYGAIIYFCSFYLIITYIVRNLLVAVIMENFSLFY 1460
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
DCG+ A+ YF FY +I Y + + +I++ + +F+
Sbjct: 1456 DCGNFYGAIIYFCSFYLIITYIVRNLLVAVIMENFSLFY 1494
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
DCG+ A+ YF FY +I Y + + +I++ + +F+
Sbjct: 1567 DCGNFYGAIIYFCSFYLIITYIVRNLLVAVIMENFSLFY 1605
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 DCGHVN*AVFYFTIFYTLIIYFM-SFYFLLIIKKYLVFF 212
DCG+ A+ YF FY +I Y + + +I++ + +F+
Sbjct: 1486 DCGNFYGAIIYFCSFYLIITYIVRNLLVAVIMENFSLFY 1524
>Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical
protein C55A1.14 protein.
Length = 323
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 132 FTIFYTLIIYFMSFYFLLIIKKYLVF 209
F FYTL I+ SF+ L+ + +L F
Sbjct: 97 FLTFYTLYIFIQSFHLLMFLLAFLKF 122
>Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical
protein T05G5.1 protein.
Length = 411
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 106 PQSSCRIPCSPGGST*F-LERP 44
PQS+C+I C GG F LERP
Sbjct: 28 PQSNCKIRCENGGMCVFDLERP 49
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 99 DCGHVN*AVFYFTIFYTLIIYFM------SFYFLLIIKKYLV 206
DCG+ A+ YF FY +I Y + F L II YL+
Sbjct: 1514 DCGNFYGAIIYFCSFYLIITYIVRNLLVGKFEKLTIINCYLI 1555
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 132 NKKPLNLHVHNPRAEFXAAXGD 67
N +PL + HNPR EF GD
Sbjct: 710 NSRPLYRNEHNPRREFQLNNGD 731
>Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical
protein F11E6.11 protein.
Length = 201
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 126 FYFTIFYTLIIYFMSFYFLL 185
+YFT+F L++ +SFYF++
Sbjct: 38 YYFTLFICLLLTPLSFYFVV 57
>Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical
protein K03D3.1 protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 123 VFYFTIFYTLIIYFMSFYFLLIIKKYLVFF 212
VF FT+ Y L F FLL ++++L++F
Sbjct: 106 VFIFTL-YLLTEAFHLITFLLALQRFLIYF 134
>U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 25 protein.
Length = 343
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 105 GHVN*AVFYFTIFYTLIIYFMSFYFLLI--IKKY 200
G+V F T F+ LI+ +F F+LI IK Y
Sbjct: 185 GYVKVVPFVRTTFFKLIVSLSAFIFMLITNIKTY 218
>AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical
protein T15B7.13 protein.
Length = 354
Score = 24.6 bits (51), Expect = 9.7
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = +3
Query: 129 YFTIFYTLIIYFMSFYFLLIIKK 197
YF +F+T++ +F + F++++ +
Sbjct: 73 YFLVFFTVLDFFCNISFIVVLSQ 95
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 126 FYFTIFYTLIIYFMSFYFLLIIKKYLVFF 212
FYFT+ L+++F+ Y ++ K + +F
Sbjct: 95 FYFTLILLLVVHFIYRYVVVCDFKKMEYF 123
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 132 NKKPLNLHVHNPRAEFXAAXGD 67
N +PL + HNPR E GD
Sbjct: 796 NSRPLYRNEHNPRRELQLNNGD 817
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 132 NKKPLNLHVHNPRAEFXAAXGD 67
N +PL + HNPR E GD
Sbjct: 737 NSRPLYRNEHNPRRELQLNNGD 758
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 132 NKKPLNLHVHNPRAEFXAAXGD 67
N +PL + HNPR E GD
Sbjct: 796 NSRPLYRNEHNPRRELQLNNGD 817
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 132 NKKPLNLHVHNPRAEFXAAXGD 67
N +PL + HNPR E GD
Sbjct: 780 NSRPLYRNEHNPRRELQLNNGD 801
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,511,159
Number of Sequences: 27780
Number of extensions: 68865
Number of successful extensions: 215
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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