Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B23
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0782 + 23114532-23114596,23116259-23116316,23116445-231165... 66 9e-12
04_04_1577 + 34554819-34554995,34555672-34555754,34555906-345562... 31 0.42
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 31 0.55
06_01_0050 - 444267-444914 29 1.3
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 1.7
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 28 2.9
11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868 27 5.1
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 27 6.8
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 27 6.8
>12_02_0782 +
23114532-23114596,23116259-23116316,23116445-23116516,
23117468-23117587,23117668-23117769,23118254-23118274
Length = 145
Score = 66.5 bits (155), Expect = 9e-12
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +3
Query: 189 KYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQK---EEIETQFLLSDQVLLKANVP 359
+YK++E L +++ L+ +IPD+ + ++++ L+ +K E + F LS+ + +A +
Sbjct: 25 QYKIVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIE 84
Query: 360 TTDIVYLWLGANVMLEYTLGDAEKLL 437
TD V LWLGANVMLEY+ +A LL
Sbjct: 85 DTDSVCLWLGANVMLEYSCDEANALL 110
>04_04_1577 +
34554819-34554995,34555672-34555754,34555906-34556229,
34556347-34556602,34556951-34557031,34557106-34557213,
34557300-34557329,34557475-34557612,34557737-34557774,
34557858-34557957,34558194-34558268
Length = 469
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 138 NSEGVDVVLKDLDEKHGKYKLMEYTLST 221
NSEG+ VV K L +HGK K+ E + ST
Sbjct: 204 NSEGIVVVAKRLGAQHGKRKMEETSSST 231
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 30.7 bits (66), Expect = 0.55
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 318 FLLSDQVLLKANVPTTDIVYLWLGANVMLEYTL---GDAEKLL 437
FL+SD+V + P +D Y+W G YT+ D EKLL
Sbjct: 481 FLVSDKVAVSTKSPKSDKQYVWEGEAESSSYTIREETDPEKLL 523
>06_01_0050 - 444267-444914
Length = 215
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 159 VLKDLDEKHGKYKL-MEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEE 305
VLK +KH K +L + KR+RL + + + A I +EK + QK E
Sbjct: 12 VLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKRE 61
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 108 NVDEFMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQ 245
++ E +LP V + K L E+HG+ +M+ +L + L QQ
Sbjct: 754 DIQELFSLPEQGFDVSLTQKQLQEEHGQQLVMDDSLRKHIQFLEQQ 799
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 129 LPANSEGVDVVLKDLDEKHGKY---KLMEYTLSTKR-KRLRQQIPDLARSIEMIEKLKTQ 296
LPAN GV L E+ Y ++ + S + R +++ L +++MIE+L+++
Sbjct: 5 LPANLVGVMEQRMKLIEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSK 64
Query: 297 KEEIE 311
+EEIE
Sbjct: 65 QEEIE 69
>11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868
Length = 426
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 177 HLDLLIQHQHLPSLLVNS*IRQHCQQRQLQVFLKMIWDSKFPLHHLPL 34
H DL+IQHQ L + + HC+ ++L++ + + +F H +PL
Sbjct: 244 HRDLVIQHQQPLQRLRHLRVL-HCRLQKLELQAPNLTEFEFANHQVPL 290
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 66 PKSFSGIPEAVFVDNVDEFMNLPANSEGV----DVVLKDLDEKHG 188
P+ F +PEA VD VDE + L V DV+ K L+ + G
Sbjct: 1987 PEHFESVPEAPSVDEVDETLVLCLGQMAVTARSDVLWKPLNHEVG 2031
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +3
Query: 129 LPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEI 308
+ + EG D++L+DLD++ + T S K+K ++++P L + + + + + E+
Sbjct: 1336 IKVDKEG-DLMLEDLDDQTSGAAEHDNTSSKKKKSSQKKLPKLQDNGSVDKNAEAEGGEV 1394
Query: 309 ETQ 317
E +
Sbjct: 1395 EDE 1397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,674
Number of Sequences: 37544
Number of extensions: 166391
Number of successful extensions: 509
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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