Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B23
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49510.1 68418.m06127 VHL binding protein, putative / prefold... 72 2e-13
At1g68790.1 68414.m07863 expressed protein 35 0.021
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 30 0.61
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 30 0.81
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 29 1.1
At5g11390.1 68418.m01329 expressed protein 29 1.4
At3g05830.1 68416.m00654 expressed protein 29 1.4
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 29 1.4
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 29 1.4
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 29 1.9
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 28 2.5
At1g78730.1 68414.m09176 F-box family protein contains F-box dom... 28 2.5
At3g13670.1 68416.m01722 protein kinase family protein contains ... 28 3.3
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 3.3
At5g63160.1 68418.m07930 speckle-type POZ protein-related conta... 27 4.3
At5g23300.1 68418.m02726 dihydroorotate dehydrogenase, mitochond... 27 4.3
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 4.3
At1g22060.1 68414.m02759 expressed protein 27 4.3
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 27 5.7
At5g09400.1 68418.m01089 potassium transporter family protein si... 27 5.7
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 27 5.7
At5g53020.1 68418.m06585 expressed protein 27 7.5
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi... 27 7.5
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 26 10.0
At5g48310.1 68418.m05968 expressed protein 26 10.0
At4g21650.1 68417.m03137 subtilase family protein contains Pfam ... 26 10.0
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 26 10.0
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 26 10.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 26 10.0
At1g30190.1 68414.m03690 expressed protein ; expression supporte... 26 10.0
>At5g49510.1 68418.m06127 VHL binding protein, putative / prefoldin,
putative similar to Swiss-Prot:Q15765 prefoldin subunit
3 (Von Hippel-Lindau binding protein 1; VHL binding
protein-1; VBP-1; HIBBJ46) [Mus musculus]
Length = 195
Score = 71.7 bits (168), Expect = 2e-13
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Frame = +3
Query: 81 GIPEAVFVDNVDEFMNLPANSEGVDV--VLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPD 254
GIP A F+ +V+ +++ G+D L E+ +YK++E L +++ L+ +IPD
Sbjct: 18 GIPAAKFIQDVETYLS----QSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73
Query: 255 LARSIEMIEKLKTQK---EEIETQFLLSDQVLLKANVPTTDIVYLWLGANVMLEYTLGDA 425
+ + +E++ L+ +K E + F +S+ + +A + TD V LWLGANVMLEY+ +A
Sbjct: 74 IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133
Query: 426 EKLLSS 443
LL +
Sbjct: 134 SALLKN 139
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 35.1 bits (77), Expect = 0.021
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 129 LPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEI 308
L EGV KDLD + K E L + K+L + L E + KLK + EEI
Sbjct: 410 LEKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENERLLEDKECLRKLKDEIEEI 469
Query: 309 ETQ 317
T+
Sbjct: 470 GTE 472
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 30.3 bits (65), Expect = 0.61
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 FMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEK-LKTQ 296
F NL S+G+ L E K + M Y + +K +L IP+LA ++E K L +
Sbjct: 508 FGNLGIESDGLRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLAR 567
Query: 297 KEEIE 311
K IE
Sbjct: 568 KSIIE 572
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 29.9 bits (64), Expect = 0.81
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 162 LKDLDEKHGKY-KLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQ 317
L L + HG + KL EY L K K Q + L + +EM+ K KEE+ Q
Sbjct: 921 LSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTK-DILKEEVSNQ 972
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 213 LSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQFLLSDQVLLKANV 356
+S K K + DL M+EK+K +KE+ E D++L K V
Sbjct: 33 VSDKGKETKSFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRKKEV 80
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 195 KLMEYTLSTKRKRLRQQIPDLARSIEMIEKL---KTQKEEIETQFLLSDQVLLKANVPTT 365
K+ T +R LR LA+ +E+ +KL + + E+E + S+Q ++ T
Sbjct: 220 KINMQTADQQRNVLRMLEKSLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTE 279
Query: 366 DIVYLWLGANVMLEYTLGDAEKL 434
D WL A+ E G ++++
Sbjct: 280 DAFSRWLEADNAAEVFKGTSKEM 302
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +3
Query: 150 VDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKE 302
VD +L+DLDEK ++ +L+T+ K++R ++ +++ +++ T+KE
Sbjct: 9 VDPLLRDLDEKKESFRRNVVSLATELKQVRGRL--VSQEQSFLKETITRKE 57
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 DEFMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARS--IEMIEKL 287
D+F LP ++ +++ K+ E + + L + + + L R ++EK+
Sbjct: 197 DDFDELPVSTASMNMTKKERREYLDQLRAENQRLLRETRDAAFEAAPLVRKPISSVLEKI 256
Query: 288 KTQKEEIETQFL 323
+ +KEEI QFL
Sbjct: 257 RRRKEEISKQFL 268
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 144 EGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIE-MIEKLKTQKEEIETQ 317
E + LKDL+ K +E TLS ++ R DL+ ++ ++EKLK+ +E +E Q
Sbjct: 254 EKAEEKLKDLEAIQVKNSSLEATLSVAMEKER----DLSENLNAVMEKLKSSEERLEKQ 308
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 111 VDEFMNLPANSEGVDVVLKDLDE-KHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKL 287
V++ N PA+ E +++LKD + + G+ M+ +S+ LR ++ L ++E +K
Sbjct: 310 VNKLQNNPADLENHEILLKDYESLRRGESNEMDEEVSS----LRCEVERLRAALEASDK- 364
Query: 288 KTQKEEIETQFLLSDQVLLKANV 356
K Q+ +E L Q L++ +
Sbjct: 365 KDQEGNVEASSRLRIQAELQSEL 387
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 165 KDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQFLLSDQVLL 344
K L +K+ + +S K K + DL M+EK+K +K++ E D++L
Sbjct: 18 KALKQKNELVETPPSPVSVKGKSAKSFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILR 77
Query: 345 K 347
K
Sbjct: 78 K 78
>At1g78730.1 68414.m09176 F-box family protein contains F-box domain
Pfam:PF00646
Length = 420
Score = 28.3 bits (60), Expect = 2.5
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 126 NLPANSEGVDVVLKDLDEKHGKYKLMEYTL--STKRKRLRQQIPDLARSIE--MIEKLKT 293
NLPA E VD+ LK + EK + KLM Y L ST K+L ++ D + E +++KL T
Sbjct: 350 NLPA-LEFVDI-LKPMVEKETELKLMSYFLEKSTILKKLTLRLGDFRGNEESALLKKLLT 407
>At3g13670.1 68416.m01722 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 703
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 132 PANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIP 251
P N+EG ++ + +K G+ + E RK++R +P
Sbjct: 424 PINTEGAQKIIFQVGQKRGRLSIGEEEEDAPRKKVRLGVP 463
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 178 SSRSFNTTSTPSEF-AGKFINSSTLSTKTASGIP 80
SS S TTS+PS F F +SST +T AS P
Sbjct: 295 SSSSGATTSSPSPFGVSTFNSSSTSNTSNASASP 328
Score = 26.6 bits (56), Expect = 7.5
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -2
Query: 190 FPCFSSRSFNTTSTPSEFAGKFINS--STLSTKTASGIPENDLGFEV---STPSPSIVP 29
FP F S T +TP+ A F + S+ A+G + GF V STP+ S P
Sbjct: 423 FPSFGVTSSATNTTPASSAATFSTTGFGLASSTPATGSTNSFTGFAVPKTSTPASSSQP 481
>At5g63160.1 68418.m07930 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 :
TAZ zinc finger; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 365
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 81 GIPEAVFVDNVDEFMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLA 260
G+ E V +NV + + L + D+ LK + H K+K +E T K L++ P L
Sbjct: 123 GVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFKTVEQTEGW--KFLQEHDPFLE 180
Query: 261 RSI-EMIEKLKTQKE 302
I + I+ +++K+
Sbjct: 181 LDILQFIDDAESRKK 195
>At5g23300.1 68418.m02726 dihydroorotate dehydrogenase,
mitochondrial / dihydroorotate oxidase / DHOdehase
(PYRD) nearly identical to SP|P32746 Dihydroorotate
dehydrogenase, mitochondrial precursor (EC 1.3.3.1)
(Dihydroorotate oxidase) (DHOdehase) {Arabidopsis
thaliana}; identical to cDNA pyrD mRNA for
dihydroorotate dehydrogenase GI:16448
Length = 460
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 138 NSEGVDVVLKDLDEKHGKYKLME 206
NSEG+ VV K L +HGK L E
Sbjct: 195 NSEGIVVVAKRLGAQHGKRMLAE 217
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/87 (21%), Positives = 39/87 (44%)
Frame = +3
Query: 45 DGVETSNPKSFSGIPEAVFVDNVDEFMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTK 224
+ + + NPK +G+ E + +E L EG++ +EK + T+ +
Sbjct: 151 ESIASKNPKELTGLLEEI--SGSEE---LKKEYEGLEEKKASAEEKAALIYQKKKTIGNE 205
Query: 225 RKRLRQQIPDLARSIEMIEKLKTQKEE 305
+K + Q + + + + E+LK K E
Sbjct: 206 KKLKKAQKEEAEKHLRLQEELKALKRE 232
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/90 (18%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +3
Query: 114 DEFMNLPANSEGVDVVLKDLDE---KHGKYKLMEYTLSTKRKRLRQQIPDLAR-SIEMIE 281
+E L + +EG+ + +L +HG+ KL+ L+ ++KR+ + D ++ ++ ++
Sbjct: 1054 NEMHLLVSKNEGLGQEISELSSVAVEHGRTKLLVEELAEEKKRVLVSLQDKSQETLGLVR 1113
Query: 282 KLKTQKEEIETQFLLSDQVLLKANVPTTDI 371
+L+ K+ + + L + + + D+
Sbjct: 1114 ELENLKKTFDHELRLERNLRQELEIKMQDL 1143
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 190 FPCFSSRSFN---TTSTPSEFAGKFINSSTLSTKTAS 89
F CF SRSFN T+ P +N+S T+ +S
Sbjct: 164 FSCFGSRSFNGRTNTNLPINNGNNMVNNSGKLTRVSS 200
>At5g09400.1 68418.m01089 potassium transporter family protein
similar to K+ transporter HAK5 [Arabidopsis thaliana]
GI:7108597; contains Pfam profile PF02705: K+ potassium
transporter; KUP/HAK/KT Transporter family member,
PMID:11500563; Note: possible sequencing error causes a
frameshift in the 4th exon|15810448|gb|AY056263
Length = 858
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 138 NSEGVDVVLKDLDEKHGKYKLMEYTLSTKRK----RLRQQIPDLARSIEMIEKLK 290
+ EG L L +H K L+ L + + RL+ P+L RS+++ EKL+
Sbjct: 171 DGEGGTFALYSLISRHAKISLIPNQLRSDTRISSFRLKVPCPELERSLKLKEKLE 225
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 27.1 bits (57), Expect = 5.7
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +3
Query: 174 DEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEI 308
D+ G+ KLM L +K RQ I AR E+ EKLK K+EI
Sbjct: 238 DDIQGQVKLMGAGLDGVKKE-RQAIS--ARINELSEKLKATKDEI 279
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 135 ANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIET 314
ANS+ ++ + L +S K KRL+QQ+ L R I E +T+K +T
Sbjct: 502 ANSKESKSLISSTSNPPWRMDLHALGVSYKIKRLKQQLMMLERYIGKPESQETEKNSSDT 561
>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 597
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 114 DEFMNLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKR 233
DE + L S ++L + HGK++L+E +KR
Sbjct: 505 DELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKR 544
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3
Query: 144 EGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQ 317
E V V LK LD + + KL R+R ++ +L S+E +LK Q+E++ETQ
Sbjct: 700 EHVQVELKRLDAERLEIKL-------DRERREREWAELKDSVE---ELKVQREKLETQ 747
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 216 STKRKRLRQQIPDLARSIEMIEKLKT 293
+T+ KR+ ++I D R +E+ E++KT
Sbjct: 1023 NTRLKRILEEIKDNEREVEVRERMKT 1048
>At4g21650.1 68417.m03137 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 766
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 45 DGVETSNPKSFSGIPEAVFVDNVDEFMNLPANSEGVDVVLKDLDEKHGKY 194
DGV+ + GIPE VD +D A ++G+ VV +E G +
Sbjct: 310 DGVDVLSVSIGGGIPEDSEVDKLDYIAAFHAVAKGITVVAAAGNEGPGAH 359
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 126 NLPANSEGVDVVLKDLDEKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEE 305
N + +D ++K L ++ YK + + + + L +++E IEKLK + E
Sbjct: 210 NNAKTKDTIDTLVKSLVIRNRSYKELLAKCNQLGRGEARSSEKLEKALEKIEKLKKRMRE 269
Query: 306 IE 311
+E
Sbjct: 270 LE 271
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 172 RSFNTTSTPSEFAGKFINSSTLSTKTASGIPENDLG 65
R F+ S PSEF ++S+ + + + END G
Sbjct: 65 RDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGG 100
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 210 TLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQFLLSDQVL 341
T S K RL + +LARS M +L +KE E D+ L
Sbjct: 158 TSSEKEARLAEATAELARSQAMCSRLSQEKELTERHAKWLDEEL 201
>At1g30190.1 68414.m03690 expressed protein ; expression supported
by MPSS
Length = 278
Score = 26.2 bits (55), Expect = 10.0
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 177 EKHGKYKLMEYTLSTKRKRLRQQIPDLARSIEMIEKLKTQKEEIETQFLLSDQVLLK 347
+K + +L T +TKRK ++ D +R + + EK + KEE E LS++ L K
Sbjct: 199 DKPRRKRLSVDTETTKRKSYGRKKSDCSRWMVIPEKWEYVKEESEEFSKLSNEELNK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,517,485
Number of Sequences: 28952
Number of extensions: 148892
Number of successful extensions: 619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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