Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B18
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 29 0.46
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 2.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 26 4.3
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 26 4.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 5.7
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 7.5
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 25 7.5
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 9.9
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 9.9
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc... 25 9.9
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 322 SRSSFSNYP*IHSLCRELM*LLLRP 248
S SS N+P H+LC++L LLLRP
Sbjct: 731 SGSSNINFPNSHTLCQKLCMLLLRP 755
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 166 TLEQVKQAKENAGVEQVCINLKTGDTTKGEVGV 264
TL Q K+ AGV NL TG T E+G+
Sbjct: 403 TLAQAALVKQAAGVSVFVGNLGTGSQTWAELGI 435
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 101 SKIEDASANIKERFAQNFILST 36
+KI+D++ANI R+A+N L T
Sbjct: 568 NKIDDSNANIGRRYARNDELGT 589
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 388 KHWETFESNLKYAVDVLQ 441
+ W +FE+N KY D++Q
Sbjct: 278 EEWHSFEANQKYFADIVQ 295
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 402 FREQSEVRCRCFTRGKSTRFD*THQSIFNAELLFE 506
F E+ ++ C F GK+ + + + +S+F +L+ E
Sbjct: 879 FLEEKQIPCEEFMPGKNAKSEKSLRSVFQEQLMRE 913
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 358 MAGIVDKPTPKHWETFESNLKYAVDVLQGESLLGLIEPINQYSMP 492
+A ++ K K W++ S KYA ++ +E I YS P
Sbjct: 399 VANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYLEVIYSYSYP 443
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 458 PSRLSPCKTSTAYFRLLSKVSQCFGVGLSTMPAIIW 351
P R S T +A FR+ ++ S+ G+ + IIW
Sbjct: 735 PLRRSHLSTGSALFRISTQASKARGITVYLRNDIIW 770
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 CANLSFMFAEASSILERYA-LARDAGFKAVESGFPFGCTLEQVKQAKENA 201
C N+SF + E S+L +A +G + L + Q+ ENA
Sbjct: 394 CVNISFNYVEGESLLMGLKNIALSSGSACTSASLEPSYVLRAIGQSDENA 443
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 406 ESNLKYAVDVLQGESLLGLIEPINQYSMPNYFLSDY 513
E +LK D L G+ + +++ +++ YF DY
Sbjct: 119 EEDLKELSDALHGKGMYLMVDVAINHTISEYFEDDY 154
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 355 IMAGIVDKPTPKHWETFESNLK 420
++A DK TP HW NLK
Sbjct: 160 VLATDEDKMTPLHWSIVGGNLK 181
>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 397 ETFESNLKYAVDVLQGESLLGLIEPINQY 483
E +SNL AVD+ + +L L++ I Y
Sbjct: 29 EEKQSNLSVAVDLTKKSEILELVDKIGPY 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,163
Number of Sequences: 5004
Number of extensions: 44488
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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