Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B18
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36) 78 4e-15
SB_58840| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13) 30 1.5
SB_1639| Best HMM Match : VWA (HMM E-Value=0) 30 1.5
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15) 29 3.4
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05) 29 3.4
SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9) 28 4.5
SB_28072| Best HMM Match : VWA (HMM E-Value=0) 28 4.5
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38) 28 5.9
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 27 7.8
>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
Length = 260
Score = 78.2 bits (184), Expect = 4e-15
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 2/171 (1%)
Frame = +1
Query: 46 MKFCANLSFMFAEASSILERYALARDAGFKAVESGFPFGCTLEQVKQAKENAGVEQVCIN 225
MK ANLS +F E ++ER A AGF VE FP+ ++K+A E AG+ IN
Sbjct: 1 MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59
Query: 226 LKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVNARKIHIMAG-IVDKPTPKH-WE 399
L GD G G+ ++P ++ EF LK + YA V ++++ G + D P+
Sbjct: 60 LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119
Query: 400 TFESNLKYAVDVLQGESLLGLIEPINQYSMPNYFLSDYGRAFGILDRINSP 552
NL + Q + ++E IN +P + ++ + +L + P
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHP 170
>SB_58840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 203 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 90
P F CL C K N KP + LN + K ++ ++
Sbjct: 105 PGFQFLCLDCYKAPQNNKPKNFVLNLTTQTKDWKITLD 142
>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
Length = 695
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 203 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 90
P F CL C K N KP + LN + K ++ ++
Sbjct: 17 PGFQFLCLDCYKAPQNNKPKNFVLNLTTQTKDWKITLD 54
>SB_1639| Best HMM Match : VWA (HMM E-Value=0)
Length = 812
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 220 INLKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVN 339
+N+ G + V +S P KE FKDNLK D+ K VN
Sbjct: 315 LNMSPGRSHAAMVTYSSFPVKEFGFKDNLKED-DFRKLVN 353
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 294 QG*FENDDRLCKGRERKKNPY-NGRHSGQTHAK 389
+G E +D++C+ R+RK N N RH +T K
Sbjct: 1226 EGTVEKEDKICRFRDRKTNDQGNHRHHSRTSEK 1258
>SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 221 IQTCSTPAFSLACLTCSKVQPNG 153
++ C F+LACL+CS V P G
Sbjct: 193 LRACRVVTFTLACLSCSGVYPCG 215
>SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 286 NEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNLKYAVDVLQ 441
N+ K ++ + AK + R I + G D P + W+ E L Y D+++
Sbjct: 112 NQTKASVTKNLHKAKTLGIRNILALRG--DPPDGEEWKALEDGLAYGADMVR 161
>SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)
Length = 459
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 250 GEVGVTSVPGKENEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNL 417
G++ SVP E F+D+L+T + + +A N + + + DK P W E+ L
Sbjct: 140 GDLCAASVPVTEWLFRDDLQTKLTHIRAAN-KILPVFLHSTDKQQPT-WHESEAEL 193
>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
Length = 662
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -1
Query: 356 IWIFLAFTAFA*SIVVFKLSLNSFSLPGTDXXXXXXXXXXXVFKLIQTCSTPAFSLACLT 177
+WI +A + F + L N+FSL G D F L+ CS+ +L C T
Sbjct: 307 VWIVVAISFFI-GLTAGALYCNAFSLSGKDNVSAVRREFSRAFLLLICCSSRVITL-CRT 364
>SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9)
Length = 171
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 127 GFKAVESGFPFGCTLEQVKQAKENAGVEQVCINLKTGDTTKGEVGVTSVPGK 282
G KAV G L + Q + A VEQVC +L D GE+ + GK
Sbjct: 58 GEKAVRECIQQGRVLGSMSQDSDRARVEQVCDDL---DQLMGELALLRAQGK 106
>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
Length = 2979
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 220 INLKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVN 339
+N+ G + V +S P KE F+DNLK D+ K VN
Sbjct: 2046 LNMSPGRSHAAMVTYSSFPVKEFGFQDNLKED-DFRKLVN 2084
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.9
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +1
Query: 97 LERYALARDAGFKAVESGFPFGCTLEQVKQAKENAGVE--QVCINLKTGDTTKGEVGVTS 270
+E Y LA AGF+A + FPF CT +Q Q ++ ++ I K KG+
Sbjct: 638 VEPYLLA--AGFEAFYTEFPFLCTDKQFYQLEDYKRIQIYPSIILPKQLYLGKGDQATNK 695
Query: 271 VPGKENEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNLKYAVDVLQG 444
++ + + T ++ A ++ + D P + FE K+ D + G
Sbjct: 696 KIMEDLKITHIVNITQEHKSAFPESIEYLTLQLDDVPQTQLINFFEKTTKFLSDAIDG 753
>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
Length = 1334
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 458 PSRLSPCKTSTAYFRLLSKVSQCFGVGLSTMPAIIW 351
P L+P STA R S V C+ G MP I W
Sbjct: 1163 PQILTPLTRSTAVLRGKSAVLTCYATG-DPMPRIAW 1197
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 439 QGESLLGLIEPINQYSMPN 495
QG++ GL++P N+Y +PN
Sbjct: 552 QGDNQSGLLQPANKYGLPN 570
>SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 203 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 90
P F CL C K KP + LN ++ K ++ ++
Sbjct: 154 PGFQFLCLNCHKDPKKNKPKNFVLNLSTQTKDWKITLD 191
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 49 KFCANLSFMFAEASSILERYALARDAGFKAVES-----GFPFGCTLEQVKQAKENAGVEQ 213
+FC+N+ S++ AL +G K VES GFP +Q K ++ + V+Q
Sbjct: 702 RFCSNI---LVHIKSVVVPTAL--QSGAKQVESYLASTGFPQDVNSDQAKLTQKGSSVQQ 756
Query: 214 VCINLKTGDTTK 249
C ++ DT +
Sbjct: 757 KCNAVQNIDTAQ 768
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = -1
Query: 209 STPAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIEDASANIKERFAQNF 48
+TP S+ C+K + KP ST + ++ Y + ++ + K F +
Sbjct: 215 ATPCSSVNNTKCTKSRNTSKPSSTTSSKSTFESGYNNSKPSSTTSSKSTFESGY 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,722
Number of Sequences: 59808
Number of extensions: 328715
Number of successful extensions: 964
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -