Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B17
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm rece...    25   7.1  
U64857-6|AAN84847.1|  172|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 172 protein.
          Length = 345

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 95  LYFICFTLLFKTQTVHIEIN 36
           +YF CF++LF T  + ++ N
Sbjct: 48  IYFCCFSILFSTLDIIVQPN 67


>U64857-6|AAN84847.1|  172|Caenorhabditis elegans Hypothetical
           protein C37C3.12 protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 73  NVKHIKYNFC 102
           N+KH+KYN C
Sbjct: 71  NIKHVKYNVC 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,146
Number of Sequences: 27780
Number of extensions: 27239
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)