Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B15
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    30   1.2  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   2.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   2.9  
03_06_0047 + 31266940-31268394                                         29   3.8  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   6.7  
02_05_1001 + 33423562-33424098                                         28   6.7  

>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
 Frame = +3

Query: 264 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 419
           + D  V   +Y P  GT     P K S+E   +P+   +       EM  +   Q + + 
Sbjct: 35  QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94

Query: 420 DIQPCICTREIKQVCGSDG-VTYGNPCLLNCATQSNPSLSIEH 545
            + P   T  I QV G+DG V++    LL+    S   L  EH
Sbjct: 95  TVHPNTTTSVILQVVGNDGSVSFCRNVLLSIV--SGCLLDYEH 135


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 68  YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 235
           Y  ++S R  AN   ++N  A+  RV+      +R  + DLP    L++REG +  RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 430 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 314
           G  S TLTSW+S   F + +G     H    ++G   PS
Sbjct: 31  GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 144 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 290
           R +   C  D  TY     ++CE DK    LK+ K    ++  P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 448 SRVQIHGCISATLTSWHS 395
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


>02_05_1001 + 33423562-33424098
          Length = 178

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 591 RLVFPQPSLCCRKDPGVRCSSSGSTVWRNSTGTGC 487
           R ++   S  CR      C      VWR +T  GC
Sbjct: 115 RALYDAASNSCRGGDAAACGHYTQVVWRRTTAVGC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,415
Number of Sequences: 37544
Number of extensions: 381936
Number of successful extensions: 1226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)