Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B15
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77270.1 68414.m08999 expressed protein 31 0.45
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 0.76
At3g14850.2 68416.m01876 expressed protein 29 2.4
At3g14850.1 68416.m01877 expressed protein 29 2.4
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 3.2
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 3.2
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 27 7.4
At5g58080.1 68418.m07268 two-component responsive regulator fami... 27 9.7
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 27 9.7
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 27 9.7
At3g48500.1 68416.m05294 expressed protein 27 9.7
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 27 9.7
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 247
TRY+ D + N R + + + R K+LKT + R + + P+V + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect(2) = 0.76
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 300 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 479
PV G DG +C S S + G Q VK+ D+Q +C +++K G
Sbjct: 81 PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137
Query: 480 TYGNPCLLNCATQSNPSLSI 539
G + NC + S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155
Score = 21.4 bits (43), Expect(2) = 0.76
Identities = 6/21 (28%), Positives = 12/21 (57%)
Frame = +3
Query: 255 TCEEADPCVCTFIYAPVCGTD 317
+ + DPCV ++ +P C +
Sbjct: 27 SADSGDPCVLSYTPSPGCAVN 47
>At3g14850.2 68416.m01876 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 474 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVEK 584
GV +G P +C Q P L ++PG V V+++
Sbjct: 223 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLKR 259
>At3g14850.1 68416.m01877 expressed protein
Length = 253
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 474 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVEK 584
GV +G P +C Q P L ++PG V V+++
Sbjct: 155 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLKR 191
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 123 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 263
P+SC C R PVCG D TY C D +++VK+G C+
Sbjct: 68 PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 384 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNCATQSNPSLSIEHPGPCD 560
K+RGE C+ + P C R VCG D VTY C CA + + G CD
Sbjct: 56 KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYW--C--GCADALCHGVRVVKQGACD 110
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 156 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 263
PVCG+DG TY C D ++VK+G C+
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 294 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 422
YA G G +PN+C L+ L PS +K E ++V D
Sbjct: 21 YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61
>At5g58080.1 68418.m07268 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 581
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 504 NCATQSNPSLSIEHPGPCDNRV 569
NC +NP +IE+P P DN V
Sbjct: 477 NCTMLNNPFGNIEYPLPADNMV 498
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 121 CRRHARAQET*DRSADQTARLTTTSAS 201
C+RH A E + +AD A TTT+ +
Sbjct: 60 CKRHVEAAEKSETTADAAAATTTTTVA 86
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 475 PSLPQTCLISRVQIHGCISATLTSW 401
P+LPQ+ + + +HGC+S SW
Sbjct: 983 PALPQS--LKLLNVHGCVSLESVSW 1005
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 288 FIYAPVCGTDGNTYPNKCSLECSRPLAP 371
F + P+ DG+T P++ +C RP P
Sbjct: 354 FDFPPIFHRDGDTNPDEIRRDCGRPPEP 381
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 445 RVQIHGCISATLTSWHS 395
R++ H CIS+++ WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,364
Number of Sequences: 28952
Number of extensions: 291217
Number of successful extensions: 881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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