Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B12
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850...   122   2e-28
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...   119   1e-27
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...   108   2e-24
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    76   1e-14
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120...    65   2e-11
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170...    29   2.0  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    29   2.0  
10_05_0031 + 8356046-8356361,8356439-8356648,8356735-8357043,835...    28   3.5  
10_06_0162 - 11348250-11349531,11349571-11349671                       27   6.1  
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    27   8.1  

>08_01_0871 +
           8502396-8502417,8503606-8503732,8503891-8503990,
           8504725-8504793,8504870-8505043,8505196-8505373,
           8505462-8505594,8505702-8505864,8507031-8507181,
           8507266-8507366,8507633-8507788,8508105-8508173,
           8508256-8508324,8508403-8508540,8508639-8508767,
           8509013-8509053,8510019-8510106,8510199-8510339,
           8510428-8510553,8510671-8510736,8510994-8511291,
           8511387-8511595,8511689-8511802
          Length = 953

 Score =  122 bits (293), Expect = 2e-28
 Identities = 54/87 (62%), Positives = 67/87 (77%)
 Frame = +3

Query: 228 GVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAG 407
           G+EIWRI+NF+PV + +  +GKF+ GDSYIILKTT+ K  +L  DIHYWIG +TSQDE+G
Sbjct: 51  GLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTALKNGSLRHDIHYWIGKDTSQDESG 110

Query: 408 AAAILTVGLDDQFGGTGVQHREAMGHE 488
            AAILTV LD   GG  VQ+RE  G+E
Sbjct: 111 TAAILTVELDAALGGRAVQYREIQGNE 137



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 231 VEIWRIQNFEPVAVQSKDFGKFYKGDSYII--LKTTSDKRNNLSWDIHYWIGSETSQDEA 404
           +++WRI + + + + S D  KFY GD YI   +    DK   L   I  W G ++ +++ 
Sbjct: 405 LQVWRINDKDKILLPSADQSKFYTGDCYIFQYMYPGDDKEECL---IGSWFGKKSIEEDR 461

Query: 405 GAAAILTVGLDDQFGGTGVQHREAMGHE 488
             A  L   + +      VQ R   G E
Sbjct: 462 VTAISLASKMVESAKFQAVQTRLYEGKE 489


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score =  119 bits (287), Expect = 1e-27
 Identities = 53/88 (60%), Positives = 65/88 (73%)
 Frame = +3

Query: 225 AGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEA 404
           +G+E+WRI+NF+PV V +   GKFY GDSYIILKTT+ K  +   D+HYW+G +TSQDEA
Sbjct: 37  SGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTALKNGSFRHDLHYWLGKDTSQDEA 96

Query: 405 GAAAILTVGLDDQFGGTGVQHREAMGHE 488
           G AAILTV LD   GG  VQ+RE  G E
Sbjct: 97  GTAAILTVELDAALGGRAVQYREVQGGE 124



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 231 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKT-TSDKRNNLSWDIHYWIGSETSQDEAG 407
           +++WR+       + S D  K Y GD YI   T T D +      I  W G ++ +++  
Sbjct: 409 LQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDKEECL--IGTWFGKKSVEEDRT 466

Query: 408 AAAIL 422
           +A  L
Sbjct: 467 SAISL 471


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score =  108 bits (260), Expect = 2e-24
 Identities = 48/88 (54%), Positives = 62/88 (70%)
 Frame = +3

Query: 225 AGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEA 404
           +G+EIWRI+  + V V  +  G+F+ GDSY+ILKTT+ K  +   DIHYW+G +TSQDEA
Sbjct: 76  SGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEA 135

Query: 405 GAAAILTVGLDDQFGGTGVQHREAMGHE 488
           G AAI TV LD   GG  VQ+RE  G+E
Sbjct: 136 GTAAIKTVELDAALGGRAVQYREVQGNE 163



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 231 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAGA 410
           +++WR+   E   +   +  KFY GD YI   +   +       I  W G ++ QDE   
Sbjct: 453 LQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGE-ECLIGTWFGKKSVQDEKTT 511

Query: 411 A 413
           A
Sbjct: 512 A 512


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 35/99 (35%), Positives = 52/99 (52%)
 Frame = +3

Query: 192 VHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHY 371
           V  AF   G + G++IW I     +A++    GKFY G++YIIL T   K      ++HY
Sbjct: 4   VDDAFLGVGDKPGLDIWCIMGSNLIAIEKSLHGKFYTGNTYIILSTVELKSGVRQHNVHY 63

Query: 372 WIGSETSQDEAGAAAILTVGLDDQFGGTGVQHREAMGHE 488
           W+G E  +++   A+   + LD   G   VQ+RE  G E
Sbjct: 64  WVGEEAKEEDCLTASDKAIELDVALGSNTVQYRETQGEE 102



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/86 (23%), Positives = 37/86 (43%)
 Frame = +3

Query: 231 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAGA 410
           +++W + N     + +++  + Y GD YII  +  +   +       W G  +  ++  A
Sbjct: 402 LKVWLVDNGSVTLLCTEEQEQLYNGDCYIIRYSYIEDGKDYHL-FFAWSGLNSINEDRVA 460

Query: 411 AAILTVGLDDQFGGTGVQHREAMGHE 488
           AA L  G+ D   G  V  +   G E
Sbjct: 461 AASLMSGMIDSVKGHAVVAQVFEGRE 486


>03_03_0001 +
           13611070-13611172,13611812-13611873,13612001-13612072,
           13612158-13612394,13612473-13612650,13612731-13612863,
           13613686-13613845,13613925-13614078,13614159-13614262,
           13614354-13614512,13615399-13615467,13615543-13615611,
           13615772-13615909,13616044-13616124,13616805-13616933,
           13617717-13617864,13618007-13618017,13618094-13618234,
           13618314-13618439,13619164-13619220,13619355-13619453,
           13619540-13619762,13620236-13620480,13621325-13621438
          Length = 1003

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = +3

Query: 357 WDIHYWIGSETSQDEAGAAAILTVGLDDQFGGTGVQHREAMGHE 488
           +DIH+WIG ++SQDEAG AAI TV LD   GG  VQHRE  G+E
Sbjct: 67  FDIHFWIGKDSSQDEAGTAAIKTVELDTMLGGRAVQHRELQGYE 110



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 123 IRQQSVNTQITSLSDKDARTKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYK 302
           ++QQ V+  I   S   A     V P     G+   +E++ +      A+  ++ GKFY 
Sbjct: 369 LKQQGVD--IKGASKSSAPVDEEVPPLLEGDGK---LEVYCVNGSAKTALPKEELGKFYS 423

Query: 303 GDSYIILKT--TSDKRNNLSWDIHYWIGSETSQDE 401
           GD YI+L T  + DKR    + + YWIG ++  ++
Sbjct: 424 GDCYIVLYTYHSGDKRE--EFYLTYWIGKDSIPED 456


>11_01_0218 -
           1704459-1704629,1704895-1705119,1705120-1705277,
           1705378-1705463,1705574-1705823,1706220-1707246
          Length = 638

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 360 DIHYWIGSETSQDEAGAAAILTVGLDDQFGGTGVQHREAMG 482
           D+H ++ S ++   +  AA    G    FGG G  H +A G
Sbjct: 303 DLHMFVWSSSASPVSERAAAAAAGAVHVFGGGGADHGDAKG 343


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 219 RQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETS 392
           ++  V +WR+   EP+ V SK FG        +IL+  +  RN L     +W    TS
Sbjct: 569 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLILEVCAAIRNLLMPRFLHWPDHPTS 626


>10_05_0031 +
           8356046-8356361,8356439-8356648,8356735-8357043,
           8357225-8357347,8357428-8357502,8357597-8357687,
           8357775-8357866,8357890-8358020
          Length = 448

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 435 RGRQSRWQPLPLHPD*SRFRSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSI 274
           RG     QP PLHP  +R R  +V  ++D +    S L L    +    Q+LSI
Sbjct: 340 RGAPVGEQPAPLHPKSTRKRKVSVKVLLDKTSKKKSDLSLQGLWIDVLDQNLSI 393


>10_06_0162 - 11348250-11349531,11349571-11349671
          Length = 460

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 488 LVAHSLAVLYPRS-TELVIEADSQDGSRS 405
           LVA   AV+YPR+  ELV  AD  DG  +
Sbjct: 57  LVAEINAVIYPRNRVELVPAADDDDGDHA 85


>12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,
            1658362-1658447,1658559-1658808,1659194-1660320,
            1662207-1662351,1663555-1663696,1663775-1663828,
            1663914-1663985,1664710-1664778,1664885-1664926,
            1665024-1665092,1665257-1665394,1665518-1665628,
            1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360  DIHYWI-GSETSQDEAGAAAILTVGLDDQFGGTGVQHREAMG 482
            D+H ++  S  S     AAA    G    FGG G  H +A G
Sbjct: 916  DLHMFVWSSSASPVSERAAAAAAAGAVHVFGGGGADHGDAKG 957


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,944
Number of Sequences: 37544
Number of extensions: 297622
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)