Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B11
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.4  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   8.5  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = +3

Query: 12  STRPLFSAVS*CCSVIALHSFELRVNLLTD--RLCKRK*NTERWLLRVLC-----TSRSR 170
           S RPL  +++ C + IALH  E   N++ D  + C  K  + R +L+ L       S  R
Sbjct: 94  SPRPLLVSLAVCMAAIALHMTEWH-NVIADVFQACSSKDPSGRCVLQFLSVLPEEASDPR 152

Query: 171 VFSLLWPVTC 200
             SL W   C
Sbjct: 153 KTSLSWEELC 162


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 274 EVPASFPCVLFLIYQIYKRI*ERM 203
           +V A FP ++FL++Q YK +  +M
Sbjct: 240 KVTAEFPIIVFLLFQTYKDLIPKM 263


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 142 RSHLSVFYFLLQSRSVNKL 86
           +SHL+ +YF L++RS+N +
Sbjct: 261 QSHLNSYYFSLRTRSLNNV 279


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 324 FNAPINILMCANGVCVGKFRPAFHVFCFLFIKFINASESGWG 199
           FN  + I +C  GV  G     FH + +L I  +     G+G
Sbjct: 410 FNNTMTIALCVFGVFAGAMHRVFHRYKYLQIIGLVIKIVGYG 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,428
Number of Sequences: 5004
Number of extensions: 47439
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)