Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B11
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 72 4e-13
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 36 0.025
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027) 33 0.18
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 31 0.71
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4) 28 6.6
SB_27904| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 71.7 bits (168), Expect = 4e-13
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = +3
Query: 417 PECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYS 521
P CPT+ E+RDQG+CGSCWAFGAVEAM+DR CI+S
Sbjct: 96 PHCPTIKEVRDQGACGSCWAFGAVEAMSDRYCIHS 130
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +2
Query: 149 ALYVALACILAVVASDLP--HPLSDAFINLINKKQNTWKAGRNFPTHTPFAHIKILMGAL 322
A +VALA ++ +PLS I+ IN TWKAG+NF +K L GA
Sbjct: 8 ATFVALASAGPILTKSPVDNNPLSMEAIDFINSLHTTWKAGKNFAEVYTIEDVKRLCGAK 67
Query: 323 KDDNILKLPKVTHDAELIANLPENFDPRDKWPRMPYIE--RD*GS 451
K + K+ + ++P++FD R++WP P I+ RD G+
Sbjct: 68 KGPPLPLRKKLLISMD---DVPDHFDSREQWPHCPTIKEVRDQGA 109
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 541 HFSAEDLVSCCPICGLGCNG 600
H SAEDL+SCC CG+GCNG
Sbjct: 137 HISAEDLLSCCETCGMGCNG 156
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = +3
Query: 417 PECPTLNEIRDQGSCGSCWAF---GAVEA---MTDRVCIYSNAT 530
P +N + QG+CGSCWAF GAVEA + + C SN T
Sbjct: 138 PSDGAVNPAKGQGTCGSCWAFATAGAVEAAHFIQEGFCKTSNLT 181
>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
Length = 295
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 459 CGSCWAFGAVEAMTDRVCI 515
CGSCWA G AM DR+ I
Sbjct: 78 CGSCWAHGTTSAMADRINI 96
>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 32.3 bits (70), Expect = 0.31
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 441 IRDQGSCGSCWAFGAVEAM 497
+++QG CGSCWAF A+
Sbjct: 130 VKNQGQCGSCWAFSTTGAL 148
>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 31.1 bits (67), Expect = 0.71
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 441 IRDQGSCGSCWAFGAVEAM 497
+++QG CGSCWAF ++
Sbjct: 348 VKNQGQCGSCWAFSTTGSL 366
>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 1220
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 3/20 (15%)
Frame = +3
Query: 441 IRDQGSCGSCWAF---GAVE 491
+++QG CGSCWAF G+VE
Sbjct: 58 VKNQGQCGSCWAFSTTGSVE 77
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.7 bits (66), Expect = 0.94
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 441 IRDQGSCGSCWAFG 482
++DQ CGSCW+FG
Sbjct: 655 VKDQAVCGSCWSFG 668
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 432 LNEIRDQGSCGSCWAFGAVEAM 497
+N ++ QG CGSC+AF A+
Sbjct: 511 VNSVKSQGICGSCYAFAVAGAL 532
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 432 LNEIRDQGSCGSCWAFGAVEAM 497
++ +R QG CGSC+A AV A+
Sbjct: 324 VSPVRGQGICGSCYALAAVGAV 345
>SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4)
Length = 360
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 175 NTRERDVQSTRRSHLSVFYFLLQSRSVNKLTRNSNE 68
+TRERD Q+ ++ + F +LQS S K T S++
Sbjct: 316 HTRERDQQTQPKTQIDTFALILQS-SARKQTSTSHQ 350
>SB_27904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +2
Query: 164 LACILAVVASDLPHPLSDAFINLINKKQNTWKAGRNFPTHTPFAHIKILMGALKDDNILK 343
L I V++ LPH L + I +IN +TW + + H + ++ + ++L
Sbjct: 4 LLIITTVISGSLPHNLLEVIITIIN---STWSSRFSTQRHHRNHQLNFIITIINSKSLLT 60
Query: 344 LPKVTHDAELI 376
H + I
Sbjct: 61 FSTQRHHRKYI 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,369
Number of Sequences: 59808
Number of extensions: 373672
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -