Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B10
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04800.1 68414.m00476 glycine-rich protein                          32   0.27 
At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) conta...    28   4.4  
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ...    27   5.8  
At2g02220.1 68415.m00159 leucine-rich repeat transmembrane prote...    27   7.7  

>At1g04800.1 68414.m00476 glycine-rich protein 
          Length = 200

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +3

Query: 195 GFYGAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVY 374
           G  G   G +GG F       G  +   GG  K V G  G+G     G  F     KGV 
Sbjct: 77  GSVGGFGGGIGGGFGGGGFGGGAGKGVDGGFGKGVDGGAGKGVDGGAGKGFDGGVGKGVD 136

Query: 375 GSGNYDLSNLEGRNFQ 422
           G          G+ F+
Sbjct: 137 GGAGKGFDGGVGKGFE 152


>At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) contains
           similarity to SWISS-PROT:Q9HC58 NKX3_HUMAN
           Sodium/potassium/calcium exchanger 3 precursor {Homo
           sapiens}; Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 570

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 10  VVLTIALCCFFNLFKYYSKAPIWSAYCF 93
           V L +ALCC   L  +  K  IW A C+
Sbjct: 212 VFLLVALCCL-GLIIFIGKVTIWVALCY 238


>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
           putative very strong similarity to PIF3 like basic Helix
           Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
           GI:22535494
          Length = 346

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 264 LNHPYCARVQNSLPYFPSEHHKSQ 193
           LNHP    +QNS P+ P+E+   Q
Sbjct: 287 LNHPGLMPMQNSAPFIPTENCSPQ 310


>At2g02220.1 68415.m00159 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1008

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 NIPEVPRMKEVNLAFMVLRGEIWEGILNARTI 252
           N+P+  R+K VNLA     G++ E   N  ++
Sbjct: 335 NLPDCKRLKNVNLARNTFHGQVPESFKNFESL 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,095
Number of Sequences: 28952
Number of extensions: 173784
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)