Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B09
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.23 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.40 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   1.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   2.1  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    25   4.9  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   4.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   4.9  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        24   8.6  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   8.6  

>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 250 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 137
           CI GF ++  + +RTR + PS    +LS T V+   FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 250 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 137
           CI GF ++  + +RTR + PS    +LS + V+   FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +3

Query: 168  DKESEHREG---FTALVRE--MKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIV 332
            D ES H EG   F   + E  MK+ALN    ++  +S     ++ I FD    I   D V
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044

Query: 333  NIQAFDYY 356
                 ++Y
Sbjct: 1045 EDILTEFY 1052


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 332 DNVDQVYDAWDVKVNGAIYVWQ 267
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 320
           AL+R    A++ K       S LP+++  I+   PSI N+
Sbjct: 2   ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 937

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = +3

Query: 27   LLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTAL 206
            ++  E YG DGI+LS    +R     +    +    I KT  +   D         FT  
Sbjct: 831  IIAKEMYGADGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVP 890

Query: 207  VREMKQALN---VKPNMQLVISVLPNV-NSSIYFDVPSIINLVDIVNI 338
            +R+M+ +     + P +   IS +P +     Y+++  I    DIV +
Sbjct: 891  IRDMRLSAGAGFIYP-LAAAISTIPGLPTKPAYYNI-DIAENGDIVGL 936


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   TAFTNSALLLAEQYGFDGIDLSWQLPK 86
           T F  S+L +A   G+D I L W L K
Sbjct: 534 TEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 ISVLPNVNSSIYFDVPSII 314
           I+VLP+++ S + D PSI+
Sbjct: 191 INVLPSISPSSFLDSPSIM 209


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = -3

Query: 199 VKPSLCSDSLSSTG--------VVPNVFLMLCQKDPILERIFF 95
           +KPS  +D  SSTG        + PN+ ++LC    ++  +FF
Sbjct: 341 IKPSYSADPSSSTGASLTESPGIPPNIVIILCLIFFLIGYLFF 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,102
Number of Sequences: 5004
Number of extensions: 25269
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)