Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B08
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    29   0.64 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   6.0  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   7.9  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
 Frame = +3

Query: 132 SQNVVSSPLSAEYXXXXXXXXXXDPA----HEELLTSLDIPNDDCIRSSFTS-ITSNLKS 296
           S+ V+SSP S +             +    HE+LLT  ++ N   I S FTS + S L +
Sbjct: 102 SRKVISSPYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSNSSQILSPFTSLLPSTLST 161

Query: 297 IQGITLNIA-NKVYLKE-GPYELHSELKEDAVKVFDASFEKL 416
           ++   L+++ N+  L+  G   +   + +   K +D + +++
Sbjct: 162 LKDTPLSVSQNEKNLETVGEVLVPETVAQHRTKFYDYTLDEM 203


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 312  LNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFND 428
            L+ ++  YLK+G +EL   +  D   V D  F+ ++  D
Sbjct: 1255 LSTSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVSLLD 1293


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 254 YSFLIHFNYIQFEVYTRY 307
           ++F+I FNYI+  +Y+R+
Sbjct: 431 HAFIIKFNYIKPSIYSRF 448


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 565 IPLKYRALTRTTLE 524
           + LKYRA+TRTT++
Sbjct: 614 VTLKYRAVTRTTMD 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,687
Number of Sequences: 5004
Number of extensions: 34180
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)