Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B08
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 35 0.053
11_02_0011 - 7337618-7338496,7338596-7338991 33 0.16
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 33 0.16
11_02_0012 - 7346282-7347136,7347234-7347593 32 0.37
01_06_0824 - 32243495-32244319,32244449-32244859 31 0.86
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 30 1.1
01_01_1152 + 9170628-9171899 30 1.1
11_02_0014 - 7352619-7352918,7353173-7353418 29 2.0
11_01_0750 - 6315126-6315896,6316371-6316784 29 3.5
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 29 3.5
04_04_0619 + 26652923-26653267,26653440-26654273 27 8.0
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 8.0
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 34.7 bits (76), Expect = 0.053
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = -1
Query: 427 SLKFNFSKEASNTLTASSFSSECSSYGPSFKYTLFAMFSVIPCIDFKLDVIEVNEERI 254
+L+F S ASNTL S CS YG FK LF +++ C I NEER+
Sbjct: 48 TLRF-LSPHASNTL-GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERL 103
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 33.1 bits (72), Expect = 0.16
Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Frame = +3
Query: 123 LDKSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTSLDIPN-DDCIRSSFTSITSNL--- 290
+ ++N+V SP S +ELL L + DD S ++ L
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 291 KSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFN-DGAASAAAINKWVE 467
+ G ++ A V+ E EL + A + A NF S INKWV
Sbjct: 87 SASGGPRVSDACGVWHDE-TLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVS 145
Query: 468 SKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
T +VLVNA+YFKG
Sbjct: 146 KATNKLIPEILPDGSVHVDTALVLVNAIYFKG 177
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 201 DPAHEELLTSLDIPNDDCIRSS----FTSITSNLKSIQGITLNIANKVY-LKEGPYELHS 365
D E L SLD C RS + I +K I+G + +Y + EGP+E+H
Sbjct: 52 DGDSEALALSLDQSQGSCFRSREKYLYVQIDVEIKLIEGDSAGTVCTIYTISEGPWEIHD 111
Query: 366 EL 371
E+
Sbjct: 112 EI 113
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 435 ASAAAINKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
+S INKWV T +VLVNA+YFKG
Sbjct: 123 SSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKG 165
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 30.7 bits (66), Expect = 0.86
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +3
Query: 303 GITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTX 479
G + AN V++ + L + + A ++F D A IN+W ES T
Sbjct: 96 GPKVRFANGVWV-DAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATA 154
Query: 480 XXXXXXXXXXXXXXXXXVVLVNALYFKG 563
VL NALYFKG
Sbjct: 155 GRIKDFLPKDAVDRATPAVLGNALYFKG 182
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 432 AASAAAINKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
A A+ +N WVE T +VL NALYFKG
Sbjct: 211 AEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKG 254
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 450 INKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
+N WV+ T +VL NALYFKG
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKG 506
>01_01_1152 + 9170628-9171899
Length = 423
Score = 30.3 bits (65), Expect = 1.1
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 2/147 (1%)
Frame = +3
Query: 129 KSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTSLDIPN-DDCIRSSFTSITSNLKSIQG 305
+ +N + SPLS ELL L P+ + RS T + + L+ +
Sbjct: 57 QGRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPN 116
Query: 306 ITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTXX 482
+ A V++ G L E + A + A E +F A +N +V T
Sbjct: 117 TSF--ACGVWVDRGR-ALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
Query: 483 XXXXXXXXXXXXXXXXVVLVNALYFKG 563
VVL NA++FKG
Sbjct: 174 LIRDVLPPNSVDSSTVVVLANAVHFKG 200
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 438 SAAAINKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
S IN+WV T +VLVNA+YFKG
Sbjct: 86 SRKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKG 127
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 381 AVKVFDASFEKLNFNDGAASAA-AINKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYF 557
A V+ ++ +K +F + A IN WV+ T +VL +ALYF
Sbjct: 122 AGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYF 181
Query: 558 KG 563
+G
Sbjct: 182 RG 183
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 432 AASAAAINKWVESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
A A+ +N WV+ T +VL NALYFKG
Sbjct: 3 AEVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKG 46
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +3
Query: 357 LHSELKEDAVKVFDASFEKLNF-NDGAASAAAINKWVESKTXXXXXXXXXXXXXXXXXXV 533
L E + A A ++F N A+AA +N+++ T
Sbjct: 91 LRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPGTFGSSTKC 150
Query: 534 VLVNALYFK 560
VL NA++FK
Sbjct: 151 VLANAMHFK 159
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 430 PSLKFNFSKEASNTLTASSFSSECSSYG 347
PSL ++ A +S SSECSSYG
Sbjct: 108 PSLAGSYRARAPGPHATTSSSSECSSYG 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,872
Number of Sequences: 37544
Number of extensions: 190228
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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