Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B08
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      42   3e-04
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      42   4e-04
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      32   0.29 
SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.0  
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)                   29   2.0  
SB_21974| Best HMM Match : Ail_Lom (HMM E-Value=4.4)                   29   2.0  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +3

Query: 312 LNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFN-DGAASAAAINKWVESKTXXXX 488
           ++IAN ++L++  + +  E  +   K +DA    +++  D   +   +N+WVE +T    
Sbjct: 50  MSIANNLFLQKD-FSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 489 XXXXXXXXXXXXXXVVLVNALYFKGM 566
                         + LVNA+YFKGM
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGM 134


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +3

Query: 285 NLKSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAA-AINKW 461
           N  +  G  + +AN+++ + G +E+  E K+ + + F A    +++   +  A   +N+W
Sbjct: 78  NASNSDGNQILMANRLFAQMG-FEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRW 136

Query: 462 VESKTXXXXXXXXXXXXXXXXXXVVLVNALYFKG 563
           VE KT                  + LVNA+YFKG
Sbjct: 137 VEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKG 170


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 312 LNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTXXXX 488
           + + NK++  +  +E+  E      + + +   +++F + A  A   +N WV  +T    
Sbjct: 55  IQLVNKIWGHD-EFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 489 XXXXXXXXXXXXXXVVLVNALYFKGM*K 572
                         +++VNA+YFKG+ K
Sbjct: 114 KELIPHGVINSLTRLIIVNAVYFKGVWK 141


>SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 339 KEGPYELHSELKEDAVKVFDASFEKL 416
           ++GP+ +   L+ED VK++D  F+K+
Sbjct: 19  EQGPFHVFLNLQEDVVKIYDFLFKKV 44


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 339 KEGPYELHSELKEDAVKVFDASFEKL 416
           ++GP+ +   L+ED VK++D  F+K+
Sbjct: 19  EQGPFHVFLNLQEDVVKIYDFLFKKV 44


>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
          Length = 555

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 339 KEGPYELHSELKEDAVKVFDASFEKL 416
           ++GP+ +   L+ED VK++D  F+K+
Sbjct: 315 EQGPFHVFLNLQEDVVKIYDFLFKKV 340


>SB_21974| Best HMM Match : Ail_Lom (HMM E-Value=4.4)
          Length = 463

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 339 KEGPYELHSELKEDAVKVFDASFEKL 416
           ++GP+ +   L+ED VK++D  F+K+
Sbjct: 223 EQGPFHVFLNLQEDVVKIYDFLFKKV 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,341
Number of Sequences: 59808
Number of extensions: 230041
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)