Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B08
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.13 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 479  ICFALNPFVDCSSRCSSI 426
            ICF + P V C+S C+++
Sbjct: 1701 ICFTMRPVVSCASGCTAV 1718


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 281 IQFEVYTRYYTEHSK*SVLER 343
           +++E+Y +Y   H K  VLER
Sbjct: 62  LEYELYIKYSHTHEKKLVLER 82


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 249 DCIRSSFTSITSNLKSI 299
           DC+RS      SN+K I
Sbjct: 173 DCLRSELAQCESNIKVI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,482
Number of Sequences: 438
Number of extensions: 2101
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)