Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B07
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)              105   2e-23
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.33 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   1.0  
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)            31   1.0  
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)                      28   7.1  
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   7.1  
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   9.4  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      27   9.4  
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   9.4  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/98 (47%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +3

Query: 303 ECVPENLELKKKVFQNLDNVVDDN-TIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPY 479
           EC PENLELKKKVFQNL+  +  +  I              E+++ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 480 YVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSRE 593
           YVPLVE++PAPWT   V ++T  +M++IGQ PV L +E
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKE 98


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
 Frame = +3

Query: 51  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 230
           V ++G+GL+G   A   A  G +V L+D    Q  +   ++ +Q    +K+ L R  + A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYDR-SAQAMEKSKEMLIQ----QKEQLKREEVMA 62

Query: 231 DEQFQCVKGTCD-LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXX 407
              F      C+ L  AV ++  + E   ENLE+KK VF+++      N +         
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122

Query: 408 XXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIME 557
                E++ +  + +    + P Y +P VEI     T PE  +K +  +E
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 207 LLRGNLNADEQFQ--CVKGTCDLAIAVKDAIFVQECVPENL 323
           LLR   + DE  +  C++  CD+A+ V D  F+ +CV ++L
Sbjct: 806 LLRDTNDTDECMKECCLRDECDVAVMVSDYCFMADCVSDSL 846


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 48  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 134
           +V IVG GL+G   A+ FA  GY+V L++
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 24  MASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTL 128
           ++S F  ++V ++G+G+IG + A    + GY+VT+
Sbjct: 13  LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
          Length = 210

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 136 TSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 32
           TS K +WYP   N    D+P+S LP+I   S + L
Sbjct: 55  TSEKNSWYPNPEN----DIPLSTLPSIQPLSKVKL 85


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 48  KVGIVGSGLIGRSWAMLFASVGYQVTLFDVVE 143
           KVGIVGSG+ G S A L    G +V L++  E
Sbjct: 2   KVGIVGSGIAGLSAAWLLTLRGNEVHLYEKQE 33


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 553 WKK*AKSLSPYQENRWIRPYRINT 624
           W+   +S+ P + NRW+R YR+ T
Sbjct: 672 WEAYERSVIPAEGNRWLRKYRVTT 695


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 39  KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEK 146
           KS KV IVGSG+ G   A    S G  VT+ +  E+
Sbjct: 249 KSPKVIIVGSGIAGLMAARQLQSFGIDVTMVEARER 284


>SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/106 (24%), Positives = 51/106 (48%)
 Frame = +3

Query: 51  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 230
           VG+VG+G++ R      A     + L +  +  I++ ++      K L+ DG +     +
Sbjct: 288 VGVVGAGVVSRGLTGKVAKHEDTMVLAESKKNSISELVS------KALQ-DGRI-----S 335

Query: 231 DEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 368
           DE+F+ +    +    +KDAI  +  +  + +L   V  +L N+VD
Sbjct: 336 DEEFRLILQEQERYNTLKDAIRARHGLAPHYDLPNIVDYDLPNIVD 381


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 249 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 356
           +K + D+  +V DA  V E + ENL  K K+F  LD
Sbjct: 13  LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 423 ENMKHKAQVIVSHPVNP------PYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 584
           E+ K K  V+   P  P      P Y+P+    P P   P+   K ++++++I Q  +TL
Sbjct: 101 EDAKRKFLVLAPFPRMPLISPPLPMYIPVPVPQPVPQPVPQPASKGKSVLDKILQLQMTL 160


>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 246 CVKGTCDLAIAVKDAIFVQECVPENL 323
           C + TCD+A  +KD  +  EC  + L
Sbjct: 176 CDRDTCDVAFYLKDTCYSVECYADEL 201


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 226 FRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTF 47
           + FPL      KV + +  S+IAS +  S  S    W P+ A    + L +SP+   P  
Sbjct: 672 YPFPLEPGWGLKVVSASSSSSIASSVPSSMYSGPTPWIPSSA--ARYTLAVSPMLQSPRS 729

Query: 46  S 44
           S
Sbjct: 730 S 730


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 429 MKHKAQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVTKKTRAIMEE 560
           M +    +V  P  P    P+   +VP+P T+PEV   T + +E+
Sbjct: 194 MPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQ 238


>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 246 CVKGTCDLAIAVKDAIFVQECVPENL 323
           C + TCD+A  +KD  +  EC  + L
Sbjct: 187 CDRDTCDVAFYLKDTCYSVECYADEL 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,021
Number of Sequences: 59808
Number of extensions: 393674
Number of successful extensions: 1186
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)