Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B07
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 75 3e-14
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 71 5e-13
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 68 4e-12
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 31 0.47
At1g55980.1 68414.m06421 expressed protein 31 0.47
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 30 1.1
At1g50080.1 68414.m05618 hypothetical protein 28 4.4
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138... 28 5.8
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138... 28 5.8
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 27 7.7
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 75.4 bits (177), Expect = 3e-14
Identities = 50/178 (28%), Positives = 81/178 (45%)
Frame = +3
Query: 45 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 224
+ VG+VG+G +G A L A+ G V L D ++ A A I +K GL+ +
Sbjct: 5 KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64
Query: 225 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 404
D+ ++ T +L I V E + E+ ++KKK+F++LD + + I
Sbjct: 65 G-DDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122
Query: 405 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPV 578
+ +QVI H +NPP + LVEI+ T E T+ + E G+ V
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTV 180
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 71.3 bits (167), Expect = 5e-13
Identities = 47/182 (25%), Positives = 85/182 (46%)
Frame = +3
Query: 39 KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRG 218
K +KV I+G GL+G A Y V L +V EK + I +K L++ + G +
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370
Query: 219 NLNADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXX 398
++ +KG+ D + +D V E V EN+ LK+++F +L+ + I
Sbjct: 371 E-KFEKTMSLLKGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428
Query: 399 XXXXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPV 578
E K + +++ +H +P + +PL+EIV T +V + ++I + PV
Sbjct: 429 TIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV 488
Query: 579 TL 584
+
Sbjct: 489 VV 490
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 68.1 bits (159), Expect = 4e-12
Identities = 44/180 (24%), Positives = 81/180 (45%)
Frame = +3
Query: 45 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 224
+KV ++G GL+G A +V L ++ + + I ++ +K+L G L +
Sbjct: 310 KKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLTQD- 368
Query: 225 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 404
A + KG D D V E V EN++LK+ +F+ ++ V + I
Sbjct: 369 KAGKALSLFKGVLDYT-EFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTI 427
Query: 405 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 584
E K +++ +H +P + +PL+EIV + T +V A+ + I + PV +
Sbjct: 428 DLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVV 487
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 12 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 134
+R M+S + KV ++GSG+ G A A G VT+FD
Sbjct: 10 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 12 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 134
+R M+S + KV ++GSG+ G A A G VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 48 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 134
K+G +G+G++GRS GY VT+F+
Sbjct: 39 KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67
>At1g50080.1 68414.m05618 hypothetical protein
Length = 91
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 187 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 17
FNC L+ AS I + + + NN+ H+ P PTI D + + T
Sbjct: 18 FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74
>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 351
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 442 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 320
AL + S NSD V +DKIV + T + NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307
>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 439
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 442 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 320
AL + S NSD V +DKIV + T + NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 456 SHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIM 554
SHP PP VPL +P P +P+ +T +M
Sbjct: 51 SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,155
Number of Sequences: 28952
Number of extensions: 271701
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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