Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B06
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   1.7  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    24   2.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    23   4.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    23   5.3  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   7.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    22   9.3  

>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 2   VLYDLTPKPPAT 37
           VLYD++ KPPAT
Sbjct: 524 VLYDISSKPPAT 535


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 82  TLFFTERMHSWAVVIVPRI*LAITYVMNSI 171
           T F  +R+ SW  ++ P+I L + +V+  I
Sbjct: 27  TSFRQQRIKSWQPLLTPKIVLPLFFVLGII 56


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 41  SGNDCHSQTKNTFVHYFLLNECTHGQWSLFLEY 139
           + ND ++  +  F+   +  + +H  W LFL Y
Sbjct: 736 NNNDNNTPKRKNFLMDHIQRQLSHDLWYLFLGY 768


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 62   QTKNTFVHYFLLNECTHG 115
            QT+ TFV+Y+++ +   G
Sbjct: 1298 QTRPTFVYYYIVEDTVEG 1315


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 50  DCHSQTKNTFVHYFLLNECTHGQWS 124
           DC        +H  L   C  G+WS
Sbjct: 328 DCEISANAVVLHSILSRHCKIGKWS 352


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 35   TQSGNDCHSQTKNTFVHYFLLN 100
            +Q GND  +Q+ N F+   +++
Sbjct: 1462 SQPGNDDETQSTNAFIRLIIMS 1483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,356
Number of Sequences: 5004
Number of extensions: 12351
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)