Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B06
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608...    26   4.9  
12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721...    25   8.5  
09_06_0290 - 22057573-22057758,22057846-22057938,22058047-220581...    25   8.5  

>04_03_0459 +
           16159015-16159771,16160251-16160365,16160478-16160844,
           16160930-16161244,16161324-16161644,16161730-16161882
          Length = 675

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 105 HSFSKK*CTKVFLVWLWQSFPLCVAGGFGVRSY 7
           +S+S+  C + +L+WL+     C   G G +SY
Sbjct: 424 YSYSR--CLEAYLLWLFGWVMFCGGHGHGYKSY 454


>12_01_0790 +
           7216452-7216489,7216664-7216722,7217268-7218750,
           7218828-7218892,7219023-7219080,7219152-7219262,
           7219332-7219410,7219521-7219613,7219701-7219886
          Length = 723

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   YDLTPK-PPATQSGNDCHSQTKNTFVHYFLLNECTH 112
           YD  PK P + +  ND   Q     + YF+  EC H
Sbjct: 660 YDELPKFPKSERELNDTSIQNIQADMCYFIHRECAH 695


>09_06_0290 -
           22057573-22057758,22057846-22057938,22058047-22058125,
           22058195-22058305,22058377-22058634,22058712-22059088,
           22059405-22059449
          Length = 382

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   YDLTPK-PPATQSGNDCHSQTKNTFVHYFLLNECTH 112
           YD  PK P + +  ND   Q     + YF+  EC H
Sbjct: 319 YDELPKFPKSERELNDTSIQNIQADMCYFIHRECAH 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,243,997
Number of Sequences: 37544
Number of extensions: 80386
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)