Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B06
         (185 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47479| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)               26   5.6  
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)              25   9.8  
SB_24605| Best HMM Match : HNOB (HMM E-Value=0)                        25   9.8  

>SB_47479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  SGNDCHSQTKNTFVHYFLLNECTH 112
           SG + +   K TF+ +FL+N C H
Sbjct: 110 SGRNNYFDIKETFLWWFLINICLH 133


>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
          Length = 365

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 42  VGMIATAKLKTLLYTIFY*TNALMGSGHCS*NIIS 146
           +G + T K KTLL TIFY    L GS   +   +S
Sbjct: 80  IGFLITGK-KTLLQTIFYIMAQLTGSSFSTRQAVS 113


>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
          Length = 646

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 47  NDCHSQTKNTFVHYFLLNEC 106
           NDCH+      VHYFL  EC
Sbjct: 489 NDCHAADVTHTVHYFL--EC 506


>SB_24605| Best HMM Match : HNOB (HMM E-Value=0)
          Length = 676

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 108 VHSFSKK*CTKVFLVWLWQSFPLCVAGGFGV 16
           +++F KK CT+  L     + PLCV   F +
Sbjct: 626 IYTFFKKGCTQEGLTLETSAQPLCVTEAFNI 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,916,813
Number of Sequences: 59808
Number of extensions: 91084
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 16,821,457
effective HSP length: 40
effective length of database: 14,429,137
effective search space used: 303011877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)