Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B06
         (185 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    27   1.8  
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    25   5.4  

>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 53  CHSQTKNTFVHYFLLNECTHGQWSLFL 133
           C+SQ  N  VH  L++  THG+  LFL
Sbjct: 422 CYSQRVNVLVHEALISNWTHGK--LFL 446


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 20  PKPPATQSGNDCHSQTKNTF 79
           PKPP T S  +C +  KN F
Sbjct: 199 PKPPCTDSSPNCTTWAKNGF 218


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 17  TPKPPATQSGNDCHSQTKNTF 79
           TPKPP   S  +C    KN F
Sbjct: 217 TPKPPCKDSSPNCAGWAKNGF 237


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 17  TPKPPATQSGNDCHSQTKNTF 79
           TPKPP   S  +C    KN F
Sbjct: 223 TPKPPCKDSSPNCAGWAKNGF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,422,399
Number of Sequences: 27780
Number of extensions: 69587
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)