Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B06
         (185 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    27   2.3  
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    27   2.3  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    25   5.3  
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ...    25   7.0  
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    25   9.3  
At3g08670.1 68416.m01007 expressed protein                             25   9.3  
At1g17830.1 68414.m02207 expressed protein                             25   9.3  

>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 168 RIHDVSYG*LYSRNNDHCP*VHSFSKK*CTKVF-LVWLWQSFPLCVAGGFGVRSYST 1
           RI DVS   +Y    D  P  H        KV+  VWL+ +  L  AG   VR Y T
Sbjct: 437 RIADVSKLRIYQFPQDAGPMAHPVRPHSYIKVYEKVWLFTNSVLLYAGAEVVRMYKT 493


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 168 RIHDVSYG*LYSRNNDHCP*VHSFSKK*CTKVF-LVWLWQSFPLCVAGGFGVRSYST 1
           RI DVS   +Y    D  P  H        KV+  VWL+ +  L  AG   VR Y T
Sbjct: 437 RIADVSKLRIYQFPQDAGPMAHPVRPHSYIKVYEKVWLFTNSVLLYAGAEVVRMYKT 493


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 51  IATAKLKTLLYTIFY*TNALMGSGHCS*NIISHNLRHEFDSIKLL 185
           ++T  +++LL+  +   N+ +  G+ S   IS NLR  F S KLL
Sbjct: 1   MSTVPIESLLHHSYLRHNSKVNRGNRSFIPISLNLRSHFTSNKLL 45


>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 632

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 177 LCYRIHDVSYG*LYSRNNDHC 115
           LCY   D++YG  Y+ N+D C
Sbjct: 252 LCYETVDINYG-QYTCNHDDC 271


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -3

Query: 177 LCYRIHDVSYG*LYSRNNDHCP*VHSFSKK*CTKVFLVWLWQSFPLCVAG 28
           LC     + YG   S  ND    +  F+   C  V L W W  F   +AG
Sbjct: 242 LCLDTPLMLYGSRDSGENDVWSTLVKFAVPSCIAVCLEWWWYEFMTVLAG 291


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 8   YDLTPKPPATQSGNDCHS 61
           YD    PP T  GND HS
Sbjct: 98  YDWLLTPPGTPLGNDSHS 115


>At1g17830.1 68414.m02207 expressed protein
          Length = 337

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   LYDLTPKPPATQSGNDCHSQTKNTFVH 85
           L  +TPKPP+      C +   + ++H
Sbjct: 24  LRGITPKPPSFSLSQSCKNDLNSLWIH 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,130,375
Number of Sequences: 28952
Number of extensions: 63861
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,070,560
effective HSP length: 41
effective length of database: 10,883,528
effective search space used: 217670560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)