Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B05
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0918 + 12381662-12383118,12383249-12384707                       37   0.010
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     33   0.13 
12_02_0821 + 23443733-23444425                                         32   0.29 
09_05_0012 - 20063456-20064601                                         29   2.1  
01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139     29   2.1  
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    28   6.3  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    28   6.3  
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    27   8.3  

>03_02_0918 + 12381662-12383118,12383249-12384707
          Length = 971

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +3

Query: 45  RPCRNGG-TCRPDLNSRINHTCDCPLGFAGASCQ--MPLQLLQSVGFSGNGYV-ELPAEL 212
           RPC   G TC P L  R+        G +G   +  + L+ LQS+  SGN +  +LPA+L
Sbjct: 60  RPCAWAGVTCDP-LTGRVAGLSLAGFGLSGKLGRGLLRLESLQSLSLSGNNFSGDLPADL 118

Query: 213 LRYDDLQS 236
            R  DLQS
Sbjct: 119 ARLPDLQS 126


>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 30  DPCSLRPCRNGGTCRPDLNSRINHTCDCPLGF 125
           DPC L+ C +GG+C  + +S   H C C  GF
Sbjct: 11  DPCLLQYCGDGGSC--ERSSEFGHRCACHDGF 40


>12_02_0821 + 23443733-23444425
          Length = 230

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 21  GYSDPCSLRPCRNGGTCRPDLNSRINHTCDCPLG--FA-GASCQMP 149
           G++ P  + P   GG   P L   ++  CDCPLG  F+ GA+C+ P
Sbjct: 124 GFNVPVVVSPQAVGGGQCPALGCVVDLNCDCPLGQRFSDGAACRGP 169


>09_05_0012 - 20063456-20064601
          Length = 381

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 153 QLLQSVGFSGNGYVELPAELLRYDDLQSEPAVIAL-------AIHTTNDGVLLYQREALS 311
           QL + +G   +G      E +R+   QSEPA++A        AI TT DGVL    E+ S
Sbjct: 151 QLTRELGHKSDG------ETIRWLMQQSEPAIVAATGTGTVPAIATTVDGVLRIPTESPS 204

Query: 312 PYDRGD 329
              RGD
Sbjct: 205 AAARGD 210


>01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139
          Length = 301

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 236 RTCSYCARYSYNQRWCTFISERG 304
           R CSYC  Y +N R C+  +  G
Sbjct: 3   RKCSYCGNYGHNSRTCSSSASAG 25


>12_01_0672 +
           5731288-5731356,5732032-5732117,5732634-5732724,
           5732886-5732935,5733339-5733408,5733508-5733617,
           5733943-5734463,5734856-5734949,5735095-5735225,
           5735241-5736274,5736383-5736457,5736615-5737104,
           5737375-5738009,5738166-5738378
          Length = 1222

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 WICRRFLSNAFAITSKCRLQRQRICRITC 205
           W C   + N  AIT++C L +     ITC
Sbjct: 52  WFCYTCIDNWSAITNRCPLCKSEFQHITC 80


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 29/108 (26%), Positives = 48/108 (44%)
 Frame = +3

Query: 156 LLQSVGFSGNGYVELPAELLRYDDLQSEPAVIALAIHTTNDGVLLYQREALSPYDRGDFI 335
           LL+S+     G  +LP E L+ ++   E  VIAL     +D V+L  ++ L       F+
Sbjct: 56  LLESMAARARGEDDLPEEQLQANNQLQEDEVIALQAIFGDDMVILENKDNLRFIQ--IFV 113

Query: 336 LLRIERGVVVLDWDFGSGTSTITIENIRVNDGERHQIIAKLHEDNTVS 479
              +   + V      SG    T ++   N GE + + AK  ++  VS
Sbjct: 114 HYTLPDSIRVFLNLRRSGAMVGTDDSENHNGGELYHLAAKWLDEPKVS 161


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 336 LLRIERGVVVLDWDFGSGTSTITIENIRVNDGERHQIIAKL 458
           +L I+ G++   W   S  S + +E I + DG  HQ+++ L
Sbjct: 251 ILNIQVGLIRKAWKHPSADSLL-VEEIDLGDGNVHQVVSGL 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,195
Number of Sequences: 37544
Number of extensions: 319426
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)