Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B05
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 29 1.7
At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar... 29 1.7
At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote... 28 5.3
At4g10870.1 68417.m01770 hypothetical protein predicted proteins... 28 5.3
At3g03670.1 68416.m00370 peroxidase, putative similar to peroxid... 28 5.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 5.3
At1g09020.1 68414.m01006 protein kinase, putative similar to pro... 28 5.3
At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar... 27 7.0
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 27 7.0
At2g45110.1 68415.m05614 beta-expansin, putative (EXPB4) similar... 27 9.2
At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase / gibber... 27 9.2
>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
PF02984: Cyclin, C-terminal domain
Length = 1025
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -2
Query: 418 RIFSIVIVEVPLPKSQSSTTTPLSILRRMKSPRSYGLSASL*YKSTPSL 272
RIFS+V+V + SSTTT L + M PRS +AS+ + S+ +L
Sbjct: 512 RIFSVVLVPTSVCPRPSSTTTDLK--KGMGLPRSLSRTASV-FSSSAAL 557
>At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar to
beta-expansin GI:8118428 from [Oryza sativa]; identical
to SWISS-PROT:Q9SHY6 putative beta-expansin 2 precursor
(At-EXPB2)[Arabidopsis thaliana]; beta-expansin gene
family, PMID:11641069
Length = 471
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 225 DLQSEPAVIALAIHTTN-DGVLLYQREALSPYDRGDFILLRIERGVVVLDWDFGSGTSTI 401
D + P I+ + N DG L Y + P D G+FI ++ R V W SG+
Sbjct: 379 DPGANPYYISFVVEYENGDGDLAYIE--IQPAD-GEFIPMQEMRSAV---WKISSGSPLT 432
Query: 402 TIENIRVNDGERHQII 449
NIR+ E H+++
Sbjct: 433 GPFNIRLTSAESHKVV 448
>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
/ MAM33 family protein low similarity to SUAPRGA1
[Emericella nidulans] GI:6562379; contains Pfam profile
PF02330: Mitochondrial glycoprotein
Length = 267
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 423 NDGERHQIIAKLHEDNTVSLSVDSV 497
N GER ++ + ED T+ + VDSV
Sbjct: 110 NSGERTVLLTRKFEDETIQVEVDSV 134
>At4g10870.1 68417.m01770 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 173
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = +3
Query: 219 YDDLQSEPAVIALAIHTTNDGVLLYQREALSPYDRGDFILLRIERGVVVLDWDFGSGTST 398
YDD+ + + I D + +YQ + Y + R E G+ V+ ++ G +T
Sbjct: 92 YDDINIDIVYDEMKIWCEIDDLGIYQSDGDLKYYKSVIARHREEGGISVIGFETAEGATT 151
Query: 399 ITIENIRVNDGERHQIIAKLHEDN 470
+ + + E + AK++E N
Sbjct: 152 ASAKK---EEDENDEASAKMNEPN 172
>At3g03670.1 68416.m00370 peroxidase, putative similar to peroxidase
GB:CAA66966 [Arabidopsis thaliana]
Length = 321
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 75 PDLNSRINHTCDCPLGFAGASCQMPLQLLQSVGFSGNGYVELPAELLRYDDLQSEPAVIA 254
P L R+ +TC P GFA MP+ + E LL + S+PA
Sbjct: 218 PTLAGRLRNTCAVPGGFAALDQSMPVTPVSFDNLFFGQIRERKGILLIDQLIASDPATSG 277
Query: 255 LAIHTTNDGVLLYQREALSPYDRG 326
+ + ++ L ++ A++ G
Sbjct: 278 VVLQYASNNELFKRQFAIAMVKMG 301
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 131 RFLSNAFAITS-KCRLQRQRIC-RITCGIVTLR*FTIRTCSYCARYSYNQRWC 283
RFL++ FA+ C R+C CG R R CS C +Y R C
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRAC 333
>At1g09020.1 68414.m01006 protein kinase, putative similar to
protein kinase AKINbetagamma-2 [Zea mays] GI:11139548,
AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam
profile PF00571: CBS domain
Length = 487
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 85 IQGLTIPVTVHLDLPALLVKCLCNYFKVSASA 180
+Q + P +HL + ++KC+C YF+ S+S+
Sbjct: 295 LQDGSYPQLLHLASLSGILKCICRYFRHSSSS 326
>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
diacylglycerol kinase, theta (diglyceride kinase, DGK-
theta, DAG kinase theta). [Homo sapiens]
SWISS-PROT:P52824
Length = 712
Score = 27.5 bits (58), Expect = 7.0
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Frame = +3
Query: 54 RNGGTCRPDLNSRINHTCDCPLGFAGASCQMP---LQLLQSVGF------SGNGYVELPA 206
++GG P L+ R+N + F SCQ P L L V + G+G V
Sbjct: 350 KSGGQLGPFLHRRLNMLLNPVQVFELGSCQGPDAGLDLCSKVKYFRVLVCGGDGTVAWVL 409
Query: 207 ELLRYDDLQSEPAVIALAIHTTND 278
+ + + +S P V L + T ND
Sbjct: 410 DAIEKRNFESPPPVAILPLGTGND 433
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical to
chromomethylase CMT2 [Arabidopsis thaliana] GI:14583094
Length = 1295
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 509 HNHRPFHLMNADSYIYFGGIPDR 577
H+HRPFH+ N D Y IP R
Sbjct: 1112 HDHRPFHI-NEDDYARVCQIPKR 1133
>At2g45110.1 68415.m05614 beta-expansin, putative (EXPB4) similar to
beta-expansin GI:16517013 from [Oryza sativa];
beta-expansin gene family, PMID:11641069
Length = 259
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 324 GDFILLRIERGVVVLDWDFGSGTSTITIENIRVNDGERHQII 449
G FI ++ R V W SG++ NIR+ GE H++I
Sbjct: 199 GSFISMQEMRSAV---WKVNSGSALRGPFNIRLTSGESHKVI 237
>At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase /
gibberellin 3 beta-hydroxylase (GA4) identical to
gibberellin 3 beta-hydroxylase [GI:2160454]
Length = 358
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 75 PDLNSRINHTCDCPLGFAGASCQMPLQLLQSVGFSGNGYVELPAE 209
PD ++I H C F ++ +PL LLQ + F LP +
Sbjct: 65 PDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQ 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,693
Number of Sequences: 28952
Number of extensions: 251141
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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