Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B04
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   9.2  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.2  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 422  KNETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSALA 297
            KN   QR   A + A    KP +     QWWW +     A++
Sbjct: 1671 KNGQFQRAFNAILKAMDLDKPLATIEHAQWWWHQGQHRKAIS 1712


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 208 PGRRPTEPSEWPGGRSTRGASRYNIKPTTA 297
           PG R   P+   G +ST   SRYN +PT +
Sbjct: 509 PGSRNLFPTSNSGNQSTSSFSRYN-QPTVS 537


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 415 SFLSVPHFHFFINSYCPFQLITYKLAMSLSYDI 513
           S +S+P    F+  Y PF ++T  + + +++D+
Sbjct: 84  SLISIPGIFVFLGLYVPF-VVTLLIPIDVTWDV 115


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 33 PIKGVHKGMRVRNRAHHHRSA 95
          PI+ +HKG   RNR  + R A
Sbjct: 5  PIRTLHKGKAARNRTPYDRIA 25


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 455 LLIKKWKCGTDKNETLQRNQR 393
           LL+ KW   T KN+   RN+R
Sbjct: 84  LLVTKWFASTLKNQYAARNER 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,748
Number of Sequences: 5004
Number of extensions: 23431
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)