Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B04
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0061 - 4812903-4812940,4813140-4813536                           33   0.14 
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908...    30   1.3  
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892...    30   1.3  
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    29   3.1  
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    29   3.1  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    29   3.1  
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118...    28   4.0  
01_01_0868 - 6780919-6783207                                           28   4.0  
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229     28   5.3  
01_07_0139 - 41385823-41386656                                         28   5.3  
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881     27   7.1  
07_01_0775 + 5976883-5978109                                           27   9.3  
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    27   9.3  

>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 356 SHWLWCQWWWLEACFSSALAAVVG 285
           + W W QWWWLEA   +  +  VG
Sbjct: 39  TRWRWRQWWWLEATRRANSSTAVG 62


>05_05_0040 +
           21789322-21789734,21790429-21790459,21790730-21790815,
           21791000-21791012
          Length = 180

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 440 WKCGTDKN--ETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSA 303
           W+CG D +  ++   + R A  A +    G+ W    WWW E  +S+A
Sbjct: 29  WRCGGDSSCVDSTDGSGRLAPLACRGGFGGADWR--PWWWREYAWSAA 74


>03_06_0225 -
           32487592-32487710,32487860-32488325,32489124-32489237,
           32489375-32489602,32489773-32490009,32490490-32490594
          Length = 422

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 407 QRNQRAAVTASQPPKPGSHWLWCQWW 330
           Q  Q AA+TA QP K    W W + W
Sbjct: 230 QARQHAAITAFQPDKNSWGWNWLERW 255


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 206 PAGSCVDADDGNHLLLDSSVPDRLRDVRRGSYDG-NYNCAAVVVRSVPDPHP 54
           P GSC DAD    L +D +V +     R+ ++    +  AA V  S   P P
Sbjct: 32  PGGSCPDADQLPPLKIDRAVFNESAGSRKQTFSRVRFGAAAAVAASPSSPSP 83


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 374 QPPKPGSHWLWCQW 333
           +P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 374 QPPKPGSHWLWCQW 333
           +P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435


>06_03_0270 +
           19009412-19009888,19009936-19011048,19011810-19011899,
           19011928-19012027,19012135-19012333,19012559-19012679
          Length = 699

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 178 SSASTQLP-AGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQAS 324
           ++ S++ P A PG      S  PGGRS RG S     P+T+A +    A+
Sbjct: 90  AARSSRTPSAAPGGTSARGSSTPGGRSGRGTSPAR-APSTSAPSTSPTAT 138


>01_01_0868 - 6780919-6783207
          Length = 762

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 GRRPTEPSEWPGGRSTRGASR 273
           G RPTEP+EW  G    G SR
Sbjct: 298 GFRPTEPNEWELGHFGSGCSR 318


>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
          Length = 212

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 PAGPGRRPTEPSEWPGGRSTRGAS 270
           P  PGRR  +P   PGGR  + A+
Sbjct: 164 PGSPGRRLAQPPPRPGGRLAQAAA 187


>01_07_0139 - 41385823-41386656
          Length = 277

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   EVVSGAVDLHPIKGVHKGMRVRNRAHHHRSAVIISVVTS 119
           E+  G+++LHPI+    G R    A+H  +A +  +V S
Sbjct: 61  ELWCGSIELHPIRRCINGERTVRIANHDGAAPVTRIVGS 99


>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
          Length = 463

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 193 QLPAGPGRRPTEPSEWPGGRSTRGA 267
           +LP      P  PS+W G R  RGA
Sbjct: 7   RLPTWAAAAPPSPSDWDGRRPRRGA 31


>07_01_0775 + 5976883-5978109
          Length = 408

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 501 ERHCQLISNQLKRTITINKEVEVRH**K*NTTKKSTCR 388
           ERHC   +N  KR    ++E + RH    ++TKK + +
Sbjct: 15  ERHCSSSTNTKKRACRESEEEDERHCSSNSSTKKKSLK 52


>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 203 AGSCVDADDGNHLLLDSSVPDRLRD--VRRGSYDG 105
           A S +D DDG HL    SV DRL +  V   SYDG
Sbjct: 91  AVSDIDNDDGVHLGRKRSVRDRLGNNMVGSESYDG 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,046
Number of Sequences: 37544
Number of extensions: 200345
Number of successful extensions: 790
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)