Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B04
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                28   4.1  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              28   4.1  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     27   7.2  
SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)          27   9.6  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           27   9.6  

>SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 167 LLLDSSVPDRLRDVRRGSYDGNYNCAAVVVRSVPDPHPLVHPLDW 33
           L+++  +   LR +    Y G  +    V+R + + HP   PL W
Sbjct: 91  LVMEEQINSALRYLTESDYGGVLSLTDDVMRQLQEKHPNAQPLSW 135


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 236 SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 135
           S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 697 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 730


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 236 SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 135
           S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 646 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 679



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 236  SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 135
            S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 2952 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 2985


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 243 RREKYKRRQPLQ--HQTNNSSQSRRKXXXXXXXXXXXXMRARLRRLAG 380
           RR+ Y RR+P+Q  H ++++S+S R              R RL +  G
Sbjct: 43  RRDNYARRRPVQDGHSSSSTSRSSRSRSSGANSEEVHIGRYRLIKTIG 90


>SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)
          Length = 621

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 389 AVTASQPPKPGSHWLWCQWWW 327
           A+ AS   KP  +W W +W W
Sbjct: 257 ALFASVEEKPPKNWYWKRWGW 277


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 169  WLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQ 318
            + P    TQLP   G RPT P   P  R      R  I P T  + E+++
Sbjct: 1370 YFPRPQVTQLPRTRGTRPTTPVFTPSSR------RIKIHPQTKQELEDEK 1413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,487
Number of Sequences: 59808
Number of extensions: 204276
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)