Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B04
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30320.1 68416.m03828 hypothetical protein                          29   2.6  
At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containi...    28   4.5  
At3g60730.1 68416.m06794 pectinesterase family protein contains ...    28   4.5  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    28   4.5  
At3g01800.1 68416.m00122 ribosome recycling factor family protei...    27   5.9  

>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 270 PLQHQTNNSSQSRRKXXXXXXXXXXXXMRARLRRLAGCHCG 392
           PL H+T   +++RR+            M A ++++  C CG
Sbjct: 118 PLAHETAGQTEARREQEITALRENILSMNAMVQQMYSCICG 158


>At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 637

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 143 DRLRDVRRGSYDGNYNCAAVVVRSV 69
           D LRD+RR  ++ N NC  V+++++
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQAL 332


>At3g60730.1 68416.m06794 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 519

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 PAGPGRRPTEPSEWPGGRSTRGASRYN 279
           P  P  RPT P+  P GRS  G SR N
Sbjct: 163 PTRPKHRPTRPNHGP-GRSHHGPSRPN 188


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 1206

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 193 QLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQAS 324
           QLP+ PGR P++   +   +S     + N+ P  A  A++  +S
Sbjct: 658 QLPSSPGRSPSKTHTFSPKQSDSPVKKPNMLPRVADLAKQSSSS 701


>At3g01800.1 68416.m00122 ribosome recycling factor family protein /
           ribosome releasing factor family protein similar to
           SP|P82231 Ribosome recycling factor, chloroplast
           precursor (Ribosome releasing factor, chloroplast) (RRF)
           (CpFrr) (RRFHCP) {Spinacia oleracea}; contains Pfam
           profile PF01765: ribosome recycling factor
          Length = 267

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 176 GNHLLLDSSVPDRLRDVRRGSYDGNY---NCAAVVVRSVPDPHPLV 48
           G  L  D S+PD LRD RRG   G     +    +V + PD  P V
Sbjct: 44  GRDLQFDLSMPDFLRDSRRGFAKGKKSKDDSGTGMVDAAPDIGPTV 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,346,492
Number of Sequences: 28952
Number of extensions: 136380
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)