Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B03
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    44   6e-05
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195...    39   0.002
10_08_0703 - 20014414-20014920                                         29   2.5  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    27   7.5  

>05_05_0202 -
           23211342-23211385,23211493-23211579,23211666-23211779,
           23211886-23212111,23212222-23212401,23212511-23212654,
           23212818-23212979,23213093-23213296,23214109-23214156,
           23214601-23214846
          Length = 484

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
 Frame = +1

Query: 22  LKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAY--------NAPNT 177
           LKV+++EKL +     G +LK  L+KL+ E   +I  VRG+G  L            P  
Sbjct: 372 LKVLEKEKLQENAFVVGSYLKERLNKLK-EKHDIIGDVRGKGFLLGVELVTDRQKKTPAK 430

Query: 178 ETRDKINNKMKQNGVL---GGTCGEVAIRLRPALIFQKKHAEIYLDALRKTLKE 330
                + N MK  GVL   GG  G V  R+ P L F K+ ++ +++A+  +L +
Sbjct: 431 VEIGHVMNHMKDMGVLVGKGGFYGNV-FRVTPPLCFTKEDSDFFIEAMDISLSK 483


>03_05_0467 -
           24615243-24615384,24619166-24619450,24619516-24619596,
           24619807-24619904,24620038-24620190,24620705-24620760,
           24620844-24621003,24621416-24621646,24621795-24621903,
           24622642-24622799
          Length = 490

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 70  GQFLKGGLHKLENEFPGLIHSVRGRGTF----LAYNAPNTETRDKINNKMKQNGVLGGTC 237
           GQ  +  L K++  FP +I  VRGRG      L+  A +  +   I  K+K+ GVL    
Sbjct: 371 GQEFRDQLQKVQQRFPQIIREVRGRGLLNAVDLSNEALSPASAYDICIKLKERGVLAKPT 430

Query: 238 GEVAIRLRPAL 270
            +  IRL P L
Sbjct: 431 HDTIIRLAPPL 441


>10_08_0703 - 20014414-20014920
          Length = 168

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 85  GGLHKLENEFPGLIHSVRGRGTFLAYNAPN---TETRDKINNKMKQNGVLGGTCGEVAIR 255
           G ++      P  + + RGRG     N       ET   + ++ + + + G   G+  + 
Sbjct: 56  GFVYARSGRLPSYVRAKRGRGRVRRENGERHYRVETGAVMGDRRRGSELSGLGPGKGKMT 115

Query: 256 LRPALIFQKKHAEIYLDALRKTLK 327
            R  L  +  HA ++L+  R+T +
Sbjct: 116 ARGVLFLRPSHASVFLELRRRTAR 139


>02_04_0625 -
           24547435-24547569,24547674-24547742,24547871-24547997,
           24548086-24548209,24548714-24548832,24548953-24549044,
           24549124-24549329,24549429-24549534,24549636-24549740,
           24549836-24549942,24550030-24550253,24550341-24550468,
           24550945-24551022,24551338-24552012,24552655-24552798,
           24552985-24553064,24553958-24554029,24554124-24554343,
           24554460-24554590,24555118-24555243,24555567-24555695,
           24556156-24556318,24556408-24556545,24557198-24557317,
           24557521-24557682,24557751-24557876,24558172-24558342,
           24558435-24558590,24559061-24559408
          Length = 1526

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 28  VIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYN 165
           V K + ++D   E  +FL G   ++   + G++ S++  G F+ +N
Sbjct: 701 VAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFN 746


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,674
Number of Sequences: 37544
Number of extensions: 188601
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)