Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B03
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    87   6e-18
U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical p...    50   1e-06
U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical p...    50   1e-06
Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical pr...    28   2.9  
DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.       28   2.9  

>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 44/109 (40%), Positives = 67/109 (61%)
 Frame = +1

Query: 1   LILLERALKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYNAPNTE 180
           L+LLE+A++VIK++ LI+   E G   +  L +L+    G +   RGRGTF A + P+  
Sbjct: 373 LLLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKLDQARGRGTFAAVDFPSGS 432

Query: 181 TRDKINNKMKQNGVLGGTCGEVAIRLRPALIFQKKHAEIYLDALRKTLK 327
            RDK  +    NG+  G CG+ ++R RP+L++ KKH ++  D L KTLK
Sbjct: 433 LRDKFVDLAISNGLHCGGCGDRSLRFRPSLVYTKKHLDLTFDLLDKTLK 481


>U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical
           protein C16A3.10a protein.
          Length = 422

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
 Frame = +1

Query: 19  ALKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYNAPNTETRDKIN 198
           AL+++++EKL++     G  L   L  L  +   ++ +VRG+G F A          K+ 
Sbjct: 317 ALEILQEEKLVENSAVMGDLLMSKLKTLPKD---IVSTVRGKGLFCAIVINKKYDAWKVC 373

Query: 199 NKMKQNGVLG-GTCGEVAIRLRPALIFQKKHAEIYLDALRKTLKEF 333
            K+K+NG+L   T G++ IR  P L   K+  E   D + KT+ +F
Sbjct: 374 LKLKENGLLAKNTHGDI-IRFAPPLCINKEQVEQAADIIIKTVTDF 418


>U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical
           protein C16A3.10b protein.
          Length = 357

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
 Frame = +1

Query: 19  ALKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYNAPNTETRDKIN 198
           AL+++++EKL++     G  L   L  L  +   ++ +VRG+G F A          K+ 
Sbjct: 252 ALEILQEEKLVENSAVMGDLLMSKLKTLPKD---IVSTVRGKGLFCAIVINKKYDAWKVC 308

Query: 199 NKMKQNGVLG-GTCGEVAIRLRPALIFQKKHAEIYLDALRKTLKEF 333
            K+K+NG+L   T G++ IR  P L   K+  E   D + KT+ +F
Sbjct: 309 LKLKENGLLAKNTHGDI-IRFAPPLCINKEQVEQAADIIIKTVTDF 353


>Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical
           protein C07E3.1a protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 246 GYSSSTSPYIPKEACRDLFRRIKENF 323
           G+SS+ SP +  E C++LFRR++  F
Sbjct: 373 GFSSNRSPSM--EECQELFRRLRSEF 396


>DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 246 GYSSSTSPYIPKEACRDLFRRIKENF 323
           G+SS+ SP +  E C++LFRR++  F
Sbjct: 387 GFSSNRSPSM--EECQELFRRLRSEF 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,040
Number of Sequences: 27780
Number of extensions: 176936
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)