Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B03
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    46   2e-05
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    42   2e-04
At1g68800.1 68414.m07865 TCP family transcription factor, putati...    31   0.51 
At2g42900.1 68415.m05314 expressed protein                             27   4.8  
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    27   8.4  
At1g24340.1 68414.m03070 monooxygenase family protein similar to...    27   8.4  

>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = +1

Query: 19  ALKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYNAPNTETRDKIN 198
           +L VI +EKL++     G+ L+  L++++ +FP  I  VRGRG F A    N+E+   ++
Sbjct: 338 SLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEF-NSESLSPVS 396

Query: 199 N-----KMKQNGVLGGTCGEVAIRLRPALIFQKKHAEIYLDALRKTLK 327
                  +K+ GVL        +RL P L           +AL   L+
Sbjct: 397 AYDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLE 444


>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
 Frame = +1

Query: 22  LKVIKQEKLIDLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLA--------YNAPNT 177
           L VI++EKL +     G +LK  L +L+ +   +I  VRGRG  L            P T
Sbjct: 365 LNVIEKEKLQENAAMVGSYLKEKLTQLKEKHE-IIGDVRGRGLMLGVELVSDRKLKTPAT 423

Query: 178 ETRDKINNKMKQNGVL---GGTCGEVAIRLRPALIFQKKHAEIYLDAL 312
                I ++MK+ GVL   GG  G V  R+ P L F K  A+  ++A+
Sbjct: 424 AETLHIMDQMKELGVLIGKGGYFGNV-FRITPPLCFTKDDADFLVEAM 470


>At1g68800.1 68414.m07865 TCP family transcription factor, putative
           similar to cyc2 protein [Misopates orontium]; residues
           80 to 140 nearly identical to cyc1a protein (nuclear
           flower development gene cycloidea) GB:AAF07239
           [Antirrhinum siculum]
          Length = 317

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 252 NSHFTTSSA*YTVLFHFIVDFVPCFSVRRIVRQERATAANAVNKPREFVFKL 97
           NSH   SS  +     F+  F   F + + + Q++  AAN V  P +F  KL
Sbjct: 13  NSHHHYSSPSFPFSSDFLESFDESFLINQFLLQQQDVAANVVESPWKFCKKL 64


>At2g42900.1 68415.m05314 expressed protein
          Length = 276

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 226 GGTCGEVAIRLRPALIFQKKHAEIYLDALRKTL 324
           G + GE  IRL P+L  +KK +     ALR+++
Sbjct: 132 GASHGEYVIRLSPSLTERKKFSNAVESALRRSM 164


>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 825

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 142 RGTFLAYNAPNTETRDKINNKMKQNGVL 225
           + +F A N P T   D  NNK   NG++
Sbjct: 720 QSSFTANNNPPTPVNDPTNNKTVTNGII 747


>At1g24340.1 68414.m03070 monooxygenase family protein similar to
           polyketide hydroxylases from several bacterial species;
           contains Pfam:PF01360 [Monooxygenase]
          Length = 707

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = +1

Query: 52  DLVNETGQFLKGGLHKLENEFPGLIHSVRGRGTFLAYNAPNTETRDKINNKMKQNGVLGG 231
           D +  T  FLKGG H   N    L+    G G+ +          ++   K+     +  
Sbjct: 250 DSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERDLQKLVSVHFMSR 309

Query: 232 TCGEVAIRLRPALIF 276
             GE  I  RP ++F
Sbjct: 310 ELGEYLISNRPGMLF 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,472,980
Number of Sequences: 28952
Number of extensions: 159205
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)