Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B02
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    44   2e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   1.5  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   1.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.5  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.0  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    25   7.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   7.9  

>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
 Frame = +2

Query: 71  TSVLVNCIYWAVESPKLLTIPDAKHLLLPSHTPWLPRSIGAPALPHRMLAICDISAD--- 241
           + + VNCIY ++  PK  T+                 S+  P    ++  +CD+S D   
Sbjct: 243 SDIFVNCIYLSMPIPKFCTV----------------ESLNVPN--RKLRVVCDVSCDTTN 284

Query: 242 PGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVL-VCSIDNMPTQLPREATDFFGD 418
           P   I   N  TT D P          + K    P  L V SID++PT LPRE+++ F +
Sbjct: 285 PNNPIPIYNVNTTFDHP--------TVEVKGVTTPPPLEVISIDHLPTLLPRESSEAFSE 336

Query: 419 LLFP 430
            L P
Sbjct: 337 ALIP 340


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 377 PTQLPREATDFFGD--LLFPYAEDIMSSDATKPLEDHNFTSVVHGAIITSNGK 529
           P  LP+  +  FGD   +FP   + +    ++P       +VV  +I+TS G+
Sbjct: 769 PPPLPKTPSGEFGDNEFMFPKKSNRVRGHQSRPSTGSQLRNVVPVSIVTSGGR 821


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 146 LLLPSHTP-WLPRSIGAPALPHRMLAICDISADPG 247
           +L P   P W+P  +G     HR L +C +  D G
Sbjct: 15  MLQPFSNPLWVPTPVGRSGRKHRTLKMCIVLPDTG 49


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 212 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKS 334
           +L+   I     G ++  N CTTI  P  +++ D + + K+
Sbjct: 357 LLSCAPIQGHVAGIVDIPNSCTTIGVPMDIFEFDVSPNGKA 397


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 490 SKIMIFQGFSCVRTHYILSVREEKITEEISSFTRQLRRH--VVNRTHQYSRTFKALSI 323
           S I +FQ +    T ++   R   +    + F + LRR+  V    +Q S TFK ++I
Sbjct: 405 SSIKLFQAYRKTLTQFVRLTRSSPLVGLKNLFIKWLRRYTQVELLDYQESSTFKDIAI 462


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 147 YFCHHTRHGYPEVSERRHYRIGCLQFATYLPIPEAL*SS*MSVQLLIH 290
           Y       G+P  SE   YR+      +Y PI EA     MS+ +  H
Sbjct: 487 YVSRMATQGFPHPSECSLYRVSRDTLFSYHPISEAFLQRMMSLYVASH 534


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 556 LRYSKAGVNFPVACYYGSVYN-RSKI 482
           ++Y K G  F VACY   V   R+KI
Sbjct: 18  VKYKKGGKRFEVACYKNKVTEWRNKI 43


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 152 LPSHTPWLPRSIGAPALPHRMLA 220
           +PSH  W P S+ +P LPH+ ++
Sbjct: 161 VPSH--WYPVSLPSPNLPHQPIS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,852
Number of Sequences: 5004
Number of extensions: 54506
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)