Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B02
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791... 107 8e-24
08_02_0378 + 16496197-16496386,16496929-16497007,16497201-164973... 30 1.1
08_02_0372 - 16381571-16381721,16381915-16381993,16382535-16382724 30 1.1
08_01_0700 + 6171521-6171710,6172253-6172331,6172525-6172675 30 1.1
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 30 1.5
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 29 2.0
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 2.0
01_06_0829 - 32270189-32270863 29 2.6
07_01_0316 + 2226010-2226256,2226956-2227047,2227143-2227180,222... 28 6.1
07_01_0996 - 8390744-8391361 27 8.0
>02_05_0981 -
33278735-33278746,33278882-33279022,33279145-33279199,
33279787-33279950,33280043-33280139,33280507-33280678,
33281107-33281182,33281545-33281661,33281928-33282007,
33282225-33282398,33282636-33282765,33282855-33282941,
33283039-33283302,33284131-33284256
Length = 564
Score = 107 bits (256), Expect = 8e-24
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Frame = +2
Query: 11 EYEEHPERYISTFAQKIAPYTSVLVNCIYWAVESPKLLTIPDAKHLLLPSHTPWLPRSIG 190
+Y HPE Y F ++IAPY S +VNC+YW P+LL+I + L+ G
Sbjct: 328 DYYAHPEHYKPVFHERIAPYASAIVNCMYWERRFPRLLSIDQLQQLM----------KNG 377
Query: 191 APALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVLVCSID 370
P ++ I DI+ D GGSIEF+N+ T+I+ PF YD N +G GV+ ++D
Sbjct: 378 CP-----LVGISDITCDIGGSIEFVNKSTSIERPFFRYDPCTNSCHDDMEGNGVICLAVD 432
Query: 371 NMPTQLPREATDFFGDLLFPYAEDIMSSDATKPLEDH-NFTSVVHGAIITS 520
+PT+ +EA+ FGD+L + + S+ L H + H +TS
Sbjct: 433 ILPTEFSKEASQHFGDILSKFVARLASAKELLELPSHLRKACIAHAGRLTS 483
>08_02_0378 +
16496197-16496386,16496929-16497007,16497201-16497300,
16499446-16499492,16499583-16499703,16500022-16500108,
16500401-16500484,16500649-16500702,16501575-16501619,
16502076-16502156,16502557-16502602,16502696-16502748
Length = 328
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 130 DRQQFRTLHCPINTIHENRCVWCDLLCECGYISLGM 23
D+Q+F + NTI + CD +C+ G ISLG+
Sbjct: 87 DQQRFAPIDINGNTISMGAKLACDYMCDRGQISLGV 122
>08_02_0372 - 16381571-16381721,16381915-16381993,16382535-16382724
Length = 139
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 130 DRQQFRTLHCPINTIHENRCVWCDLLCECGYISLGM 23
D+Q+F + NTI + CD +C+ G ISLG+
Sbjct: 87 DQQRFAPIDINGNTISMGAKLACDYMCDRGQISLGV 122
>08_01_0700 + 6171521-6171710,6172253-6172331,6172525-6172675
Length = 139
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 130 DRQQFRTLHCPINTIHENRCVWCDLLCECGYISLGM 23
D+Q+F + NTI + CD +C+ G ISLG+
Sbjct: 87 DQQRFAPIDINGNTISMGAKLACDYMCDRGQISLGV 122
>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
Length = 393
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 264 MNSIEPPGSADMSQIASILCGNAGAPILLG 175
M ++ PPG+A + +A CGNA A + G
Sbjct: 17 MLAVAPPGAATAAAVAGCECGNAAAAAVAG 46
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 195 GAPILLGNHGVCDGRSKCFASGIVNSLGLSTAQ*IQFTRTDVYGA 61
G P + GN G DG + G+V ++G+S T Y A
Sbjct: 124 GRPGIWGNEGYLDGLGDAYEQGLVKAVGVSNYSGCNLTSRVTYDA 168
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +2
Query: 92 IYWAVESPKLLTIPDAKHLLLPSHTPW--LPRSIGAPALPH--RMLAICDISADPGGS-I 256
+Y A E+P L +PD + L +H P+ LPR++ A A P +++ +C D S +
Sbjct: 133 LYRADEAPDLDALPDPR--LFATHAPFDLLPRAVVAAAPPSGCKVVYVCRDPKDTLVSLL 190
Query: 257 EFMNE 271
+F+NE
Sbjct: 191 QFVNE 195
>01_06_0829 - 32270189-32270863
Length = 224
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 101 AVESPKLLTIPDAKHLLLPSHTPWLPRSIGAP 196
A + P + PD H LP H PW GAP
Sbjct: 104 AGQRPATASQPDHHHDHLPHHDPWFMGGAGAP 135
>07_01_0316 +
2226010-2226256,2226956-2227047,2227143-2227180,
2227289-2227450,2227540-2227562,2227673-2227744,
2227858-2228025,2228318-2228400,2228533-2228595,
2228735-2228917
Length = 376
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 240 SADMSQIASILCGNAGAPILLGNHGVCDGRSKCFASGIVNSLGLS 106
S D ++S+ P L GN G DG + + G+V ++G+S
Sbjct: 164 SLDRLGLSSVELYQLHWPGLWGNEGYLDGLADAYEQGLVKAVGVS 208
>07_01_0996 - 8390744-8391361
Length = 205
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 372 TCRRNCRVKLLISSVIFSSLTLRI 443
TC NCR L++ ++F +L L +
Sbjct: 8 TCSNNCRDGLIVCGIVFGTLLLAV 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,861
Number of Sequences: 37544
Number of extensions: 362888
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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