Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B02
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)             178   3e-45
SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               30   1.5  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             30   1.5  
SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              27   8.2  

>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score =  178 bits (433), Expect = 3e-45
 Identities = 86/148 (58%), Positives = 102/148 (68%)
 Frame = +2

Query: 2   DHEEYEEHPERYISTFAQKIAPYTSVLVNCIYWAVESPKLLTIPDAKHLLLPSHTPWLPR 181
           D +EYE HPERY STFA+ +AP+ SVLVN  YWA   P++LT  DAK+LL P        
Sbjct: 188 DAQEYEAHPERYRSTFAEIVAPHMSVLVNGTYWAPGLPRVLTYDDAKNLLKPMART--SA 245

Query: 182 SIGAPALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVLVC 361
             G P LPHR+LAICDISADP GS+EFM ECTTI+ PF LYD           G GVL+C
Sbjct: 246 YDGCPNLPHRLLAICDISADPDGSLEFMKECTTIEYPFHLYDIKTGTSQIGMAGDGVLIC 305

Query: 362 SIDNMPTQLPREATDFFGDLLFPYAEDI 445
           SIDN+P QLPREATD+FG LL P+  ++
Sbjct: 306 SIDNVPAQLPREATDYFGKLLLPWLPEM 333


>SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 128 IPDAKHLLLPSHTPWLPRSIGAPALPHRMLAICDISA 238
           IP     + P  TP  P SIG  A   R+  ICDI A
Sbjct: 168 IPVCVAAVCPPQTPTAPASIGGDAQSFRLQKICDIQA 204


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 307 IIETERCINSCTLIHELYRASGIGRYVANCKHPMR*CRRSDTS 179
           I E   C+++C+    +Y+ SGI     +   PMR C + D S
Sbjct: 171 ICEARECVSTCSDSDCVYKESGIRVVPTSPYRPMRQCNKPDDS 213


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 307 IIETERCINSCTLIHELYRASGIGRYVANCKHPMR*CRRSDTS 179
           I E   C+++C+    +Y+ SGI     +   PMR C + D S
Sbjct: 171 ICEARECVSTCSDSDCVYKESGIRVVPTSPYRPMRQCNKPDDS 213


>SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 550 YSKAGVNFPVACYYGSVYNRSKIMIFQGFSCVRTHYILSVREEKITEEISSFTRQLRRH- 374
           YSKA     + C      + SK +     +C+ THY  +VR+  +T   + +++ +R+H 
Sbjct: 145 YSKAVRQHDMTCL---TTHYSKAVRQHDMTCLTTHYSKAVRQHDMTCLTTHYSKAVRQHD 201

Query: 373 VVNRTHQYSR 344
           +   T  YS+
Sbjct: 202 MTCLTTHYSK 211



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 490 SKIMIFQGFSCVRTHYILSVREEKITEEISSFTRQLRRH-VVNRTHQYSRTFK 335
           SK +     +C+ THY  +VR+  +T   + +++ +R+H +   T  YS+  +
Sbjct: 146 SKAVRQHDMTCLTTHYSKAVRQHDMTCLTTHYSKAVRQHDMTCLTTHYSKAVR 198


>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 164 TPWLPRSIGAPALPHRMLAICDISA 238
           TP  P SIG  A   R+  ICDI A
Sbjct: 122 TPTAPASIGGDAQSFRLQKICDIQA 146


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 546  RRLVSTFPLLVIMAPCTTEVKL*SSKG 466
            R++  T PLL  +AP + EVKL ++KG
Sbjct: 2255 RQMFGTVPLLSPLAPNSMEVKLEAAKG 2281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,674,127
Number of Sequences: 59808
Number of extensions: 429802
Number of successful extensions: 1770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)