Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B02
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical ... 198 2e-51
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 29 2.3
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr... 29 3.1
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 29 3.1
Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical pr... 28 4.1
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 28 4.1
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 28 4.1
AF101305-3|AAF98595.1| 341|Caenorhabditis elegans Serpentine re... 28 4.1
AF016654-3|AAB66030.1| 348|Caenorhabditis elegans Hypothetical ... 28 4.1
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 27 7.2
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 27 7.2
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 27 7.2
>AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical
protein R02D3.1 protein.
Length = 934
Score = 198 bits (484), Expect = 2e-51
Identities = 92/178 (51%), Positives = 124/178 (69%), Gaps = 1/178 (0%)
Frame = +2
Query: 2 DHEEYEEHPERYISTFAQKIAPYTSVLVNCIYWAVESPKLLTIPDAKHLLLPSHTPWLPR 181
D +E+E+ P+RY S FA +IAPY SV++N +YW +SP+L+TIPDAK+LL P P
Sbjct: 286 DKKEFEQFPDRYTSKFATEIAPYASVIINGVYWDAQSPRLITIPDAKNLLTPVQRYDTP- 344
Query: 182 SIGAPALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSF-KGPGVLV 358
G P LPH ++A+CDISADPGGS+EFM ECTTID PF +YDAD N + SF G LV
Sbjct: 345 --GCPTLPHHLIALCDISADPGGSVEFMRECTTIDKPFAIYDADFNTSSDSFDAASGCLV 402
Query: 359 CSIDNMPTQLPREATDFFGDLLFPYAEDIMSSDATKPLEDHNFTSVVHGAIITSNGKV 532
CSIDNMP Q+P EAT+ FG+LL+P+ D++++ + + + + AIIT GK+
Sbjct: 403 CSIDNMPAQMPIEATEQFGNLLYPWLWDLLNTSNDQHFDRLQCRTEIKNAIITDQGKL 460
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 140 KHLLLPSHTPWLPRSIGAPALPHRML 217
KH LP H+ W+P I L H+ML
Sbjct: 138 KHTWLPEHSIWIPDIIVFNTLEHKML 163
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 12 SMRNIPRDIYPHSHKRSHHTHR 77
S RN+PRD+ ++ K HH H+
Sbjct: 18 SCRNVPRDLEYNNRKSIHHNHQ 39
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 12 SMRNIPRDIYPHSHKRSHHTHR 77
S RN+PRD+ ++ K HH H+
Sbjct: 18 SCRNVPRDLEYNNRKSIHHNHQ 39
>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1201
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 147 YFCHHTRHGYPEVSER-RHYRIGCLQFATYLPIPEAL*SS*MSVQLLIHLSVSMMQTETR 323
YFCH + E +H+R+ C + Y P+ + L ++ ++ + L ++ Q +
Sbjct: 268 YFCHICGTVFIEQDNLFKHWRLHCEEVIAYTPVDQYLSNTELATLAWLVLQTTISQADIE 327
Query: 324 ILR 332
LR
Sbjct: 328 CLR 330
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 147 YFCHHTRHGYPEVSER-RHYRIGCLQFATYLPIPEAL*SS*MSVQLLIHLSVSMMQTETR 323
YFCH + E +H+R+ C + Y P+ + L ++ ++ + L ++ Q +
Sbjct: 270 YFCHICGTVFIEQDNLFKHWRLHCEEVIAYTPVDQYLSNTELATLAWLVLQTTISQADIE 329
Query: 324 ILR 332
LR
Sbjct: 330 CLR 332
>Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical
protein T28F3.3 protein.
Length = 393
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 24 IPRDIYPHSHKRSHHTHRFS 83
IP + PH H HH H S
Sbjct: 135 IPHSLSPHDHSHDHHDHNHS 154
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 103 CPINTIHENRCVWCDLLCECGYISLGM 23
CP+ H NRC +C L +C +S+GM
Sbjct: 70 CPVTKFHRNRCQYCRLR-KC--LSMGM 93
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 103 CPINTIHENRCVWCDLLCECGYISLGM 23
CP+ H NRC +C L +C +S+GM
Sbjct: 194 CPVTKFHRNRCQYCRLR-KC--LSMGM 217
>AF101305-3|AAF98595.1| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 1 protein.
Length = 341
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 85 HENRCVWCDLLCECGYISLGMFLILL 8
+ENR WC +L +ISL +FL +
Sbjct: 134 YENRYKWCGVLLNIFHISLALFLFTI 159
>AF016654-3|AAB66030.1| 348|Caenorhabditis elegans Hypothetical
protein C17A2.4 protein.
Length = 348
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 285 SIVVHSFMNSI-EPPGSADMSQIASILCGNAGAPILLGNH 169
SIVVHS M + PP + L N +P LGNH
Sbjct: 4 SIVVHSKMFRVFYPPAVLHFNSTEHFLSSNLASPSRLGNH 43
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = -3
Query: 297 QKGVSIVVHSFMNSIEPPGSADMSQIASILCGNAGAPILLGNHGVCDGRSKCFASGIVNS 118
+K ++ N I + + S+L G ILL N VCD CF +
Sbjct: 148 KKSTQNLLEMCQNFIRSANLDEFYVLRSLLLSPPG--ILLSNEAVCDMMQSCFRIVFEQN 205
Query: 117 LGLSTAQ*IQFTRTDVYGAIF 55
L L + + T D+ IF
Sbjct: 206 LSLLLRKAAESTLADMTQLIF 226
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = -3
Query: 297 QKGVSIVVHSFMNSIEPPGSADMSQIASILCGNAGAPILLGNHGVCDGRSKCFASGIVNS 118
+K ++ N I + + S+L G ILL N VCD CF +
Sbjct: 148 KKSTQNLLEMCQNFIRSANLDEFYVLRSLLLSPPG--ILLSNEAVCDMMQSCFRIVFEQN 205
Query: 117 LGLSTAQ*IQFTRTDVYGAIF 55
L L + + T D+ IF
Sbjct: 206 LSLLLRKAAESTLADMTQLIF 226
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 89 NSREPMCMVRSFVRMWIYISRDV-PHTPRG 3
+S EP+ + R+ ++MW I DV TPRG
Sbjct: 174 SSSEPLLVRRNVIKMWKGIENDVILRTPRG 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,718
Number of Sequences: 27780
Number of extensions: 311987
Number of successful extensions: 872
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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