Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_B01
(317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 78 4e-16
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 0.30
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 0.39
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.91
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 2.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 2.1
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 25 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 6.4
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 24 6.4
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 8.5
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac... 23 8.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 23 8.5
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 23 8.5
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 8.5
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 23 8.5
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 77.8 bits (183), Expect = 4e-16
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 67 DPNASYVHICANETIHGVEFDFIPDT--KGVPLVADMSSNFMSKKVDVSKFGVIYGGAQK 240
D S V+ C NET+HGVEF+ P KG V D+SSNF+S+K+D +K +I+ GAQK
Sbjct: 156 DGETSLVYYCDNETVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHDIIFAGAQK 215
Query: 241 NIGTSGVALVIVREDL 288
N G +G+ +V VR+ +
Sbjct: 216 NAGPAGITVVFVRDSV 231
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 0.30
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 221 ITPNLDTSTFFDIKFDDISATSGT 150
ITPNL TS FFD+ D T+G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.9 bits (59), Expect = 0.39
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 305 VKLDSGKSSLTMTSATPDVPIFFWAP 228
V SGK L +TS+TP+ P F+ P
Sbjct: 1058 VDQSSGKDKLLLTSSTPNKPTTFFMP 1083
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 0.91
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -1
Query: 278 LTMTSATPDVPIFFWAPPYITPNLDTSTFFDIKFDDISATSGTPFVSGIKSNSTP 114
+T T+ T + + + P +PN +S+ + ++ + +GT S S P
Sbjct: 586 VTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIP 640
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 284 SSLTMTSATPDVPIFFWAPPYITPNLDTSTF 192
+ L++ S+TP P+ P Y TP+ S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 278 LTMTSATPDVPIFFWAPPYITPNLDTSTFFDIKFDDISATSGTPFVS 138
+T T + FW PYI N + FD + + A S VS
Sbjct: 2043 ITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSANNVS 2089
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 281 SLTMTSATPDVPIFFWAPPYITPNLDTSTFFDIKFDDISATSGTPFVSGIKS 126
+++ +AT P+ P TP +D + + KF D+ +S S ++S
Sbjct: 278 TISNVNATNFHPLHSQQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQS 329
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 187 SKKVDVSKFGVIYGGAQKNIGTSGVALVIVREDLPESSF 303
+K V SK VI+G + G SGV +LP +F
Sbjct: 57 NKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTF 95
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 284 SSLTMTSATPDVPIFFWAP 228
S++ + PD+P FFW P
Sbjct: 355 SNVFVPPEDPDLPAFFWDP 373
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +2
Query: 5 IWFYQRLIVMSIYRISQRGTWILMPHM 85
IW Q + ++ + I G W PH+
Sbjct: 66 IWSNQAIRILMAFNILANGGWFFDPHV 92
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 29 VMSIYRISQRGTWILMPHMYIYAQTKPYTVSNLI 130
+ ++Y I+ + T+I++ IYA T T NL+
Sbjct: 470 IKALYVINYQNTFIIITGKSIYAVTPSCTKYNLL 503
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 95 AQTKPYTVSNLILYPIQRECR 157
A P+T + L +Y I+ ECR
Sbjct: 825 AMIGPFTKTGLNIYDIREECR 845
>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
L35a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 187 SKKVDVSKFGVIYGGAQKNIGTSGVALVIVREDLPESSF 303
SK V SK VI+G + G SG +LP +F
Sbjct: 57 SKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTF 95
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 8.5
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = -1
Query: 254 DVPIFFWAPPYITP------NLDTSTFFDIKFDDISATSGTPFVSGIKSNSTPCMVSFAH 93
DVP+ W Y P +L+ + + + + ++GT F S + TP A
Sbjct: 93 DVPLLQWLEKYTFPLESSLADLEEARQVYKRVVERTLSNGTTFASYFSTLHTPTSALLAE 152
Query: 92 IC 87
IC
Sbjct: 153 IC 154
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 52 STWNLDPNASYVHICANETIHGVEFDFIPDTKG 150
S NLD + H N +HG+ I DT G
Sbjct: 564 SLQNLDNDHHCHHHHENHNMHGIFLHIIADTMG 596
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 65 WILMPHMYIYAQTKPYTVSNLILYPIQRE 151
++LM Y+ KP NL+L P+++E
Sbjct: 214 YVLMVLYYLIHVIKPPVFPNLLLSPLKQE 242
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 197 TFFDIKFDDISATSGTPFVS 138
TF+DI F+D+ +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,609
Number of Sequences: 5004
Number of extensions: 29400
Number of successful extensions: 99
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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