Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_B01
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-09
SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)            27   4.4  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   27   4.4  
SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4)                   27   4.4  
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   7.6  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             26   7.6  
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)             26   7.6  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +1

Query: 1   VNMVLPATDRHVDIPDQSTWNLDPNASYVHICANETIHGVEFDFIPDTKGVPLVADMSSN 180
           VN+VLP T  +  IPD S W L+P+ASYV+ C NET+H +E   I  +  +  V D S+ 
Sbjct: 66  VNLVLPKTSTYDSIPDPSQWTLNPDASYVYYCENETVHEMERRSIIKSTMIYDVMDNSNG 125

Query: 181 F 183
           F
Sbjct: 126 F 126


>SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)
          Length = 257

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +3

Query: 213 WSNIRW--SPKKYWYIRCSACHC 275
           W+ ++W   P K W I C   HC
Sbjct: 7   WNELQWFWDPNKTWVIPCRCEHC 29


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 161  TSGTPFVSGIKSNSTPCMVSFAHI 90
            T  T F+ G + +STPC VS  HI
Sbjct: 1049 TLETAFIRGQECSSTPCTVSAWHI 1072


>SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4)
          Length = 216

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +3

Query: 213 WSNIRW--SPKKYWYIRCSACHC 275
           W+ ++W   P K W I C   HC
Sbjct: 34  WNELQWFWDPNKTWVIPCRCEHC 56


>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 777

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 71  LMPHMYIYAQTKPYTVSNLILYP 139
           L  H+ I+++ KPY     +LYP
Sbjct: 484 LKRHLIIHSRRKPYKCDECVLYP 506


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  LPATDRHVDIPDQSTWNLDPNASYVHICANETIH 114
           LP T RH  +P+ +  N  PN +  +   N T H
Sbjct: 171 LPNTTRHNSLPNTARHNSPPNTTRHNSLPNTTRH 204


>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  LPATDRHVDIPDQSTWNLDPNASYVHICANETIH 114
           LP T RH  +P+ +  N  PN +  +   N T H
Sbjct: 140 LPNTTRHNSLPNTTRHNSPPNTTRHNSLPNTTRH 173


>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
          Length = 653

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 119 SNLILYPIQRECR*SLICHQTLCRRKLMYLSLE*YTVEPKKILVHPV*RLSLS 277
           +N+ +  +Q EC   L  +      K+ ++ L+   V  K +L HPV  L ++
Sbjct: 42  ANVYILEVQEECETKLKRYTNKYPFKMKFVGLDCEWVNKKGVLSHPVALLQIA 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,461,201
Number of Sequences: 59808
Number of extensions: 215778
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)