Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A23
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 43 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 33 0.12
11_01_0750 - 6315126-6315896,6316371-6316784 33 0.20
03_05_0294 + 22855503-22855946,22856346-22856399 32 0.27
01_01_1152 + 9170628-9171899 30 1.1
09_02_0338 + 7426999-7428322,7428390-7428646 29 1.9
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 1.9
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 29 2.5
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 29 3.3
04_04_0619 + 26652923-26653267,26653440-26654273 28 4.4
03_06_0584 + 34909800-34910261 28 5.8
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 7.7
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.2 bits (97), Expect = 1e-04
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Frame = +3
Query: 171 DKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG--NGDYSGVANPYISLSKTFSEMNP 344
DKN+ SPL + + L AGA + +I FLG G +++L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 345 ------DYFTMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDFSD-TKKAADIINQWAN 500
AN ++V L + + +Y++E + F D ++A IN+W
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 501 EKTRGHIKSPISDDTID 551
T G IK + D +D
Sbjct: 151 SATAGRIKDFLPKDAVD 167
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +3
Query: 174 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGN-GDYSGV---ANPYISL-SKTFSEM 338
+NV SPL + + + L AGAG +R ++ LG G G+ A + L S
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 339 NPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDF 455
A+ ++V +L + F + V +Y++E ++DF
Sbjct: 95 GGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 32.7 bits (71), Expect = 0.20
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Frame = +3
Query: 183 VSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG--NGDYSGVANPYISLSKTFSEMNPDYFT 356
VS+P V + + L GA +R ++ + LG G G A+ S+ + D T
Sbjct: 36 VSAP-AVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRST 94
Query: 357 -------MANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDFSDTKK-AADIINQWANEKT 509
A ++ +L +F + Y S + DF + + A D IN W + T
Sbjct: 95 SGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDST 154
Query: 510 RGHIKSPISDDTIDPN 557
+G + + + TID N
Sbjct: 155 KGTVTTLLPAGTIDQN 170
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 32.3 bits (70), Expect = 0.27
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Frame = +3
Query: 177 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFL---GNGDYSGV---ANPYISL-SKTFSE 335
NV SPL + + + L AGAG +R ++ L G G G+ A + L S
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 336 MNPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDFSDTKKAAD 479
A+ +++ + +L + F + V +Y++E ++DF TK D
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF-QTKVLRD 152
>01_01_1152 + 9170628-9171899
Length = 423
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 174 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGV-ANPYISLSKTFSEMNPDY 350
+N + SPL + L GA ++ E+ FLG+ + + +P L +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 351 FTMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHIK 524
F A ++V L +F +Y + E DF + ++A + +N + ++ T G I+
Sbjct: 119 F--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIR 176
Query: 525 SPISDDTID 551
+ +++D
Sbjct: 177 DVLPPNSVD 185
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 252 HDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP 148
H+YLH+ + E + +SRLMV+ +C ++ + P
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTLPHRNP 413
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 250 RLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 80
R+P P P L+ ++S+I L+F Y + C + + + P+ L W +
Sbjct: 40 RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 285 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTF 151
NL+ +C H + RRQL T+ SS + +S PS Y+F
Sbjct: 799 NLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTSYSF 843
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 324 FYLS*CTDWQPRYNLHCLKTC 262
+ L CTD+ P+Y HC +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 28.3 bits (60), Expect = 4.4
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Frame = +3
Query: 153 TYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFS 332
T ++ N + SPLG+ + L G + ++ FLG+ + + + +
Sbjct: 13 TKAITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGS---QHIHQLNAASAGLLA 69
Query: 333 EMNP-DYFTMANKIYVGNKYTLDEKFTIT-VRQYQSEVETIDFSDTKKAADI-INQWANE 503
EM + A I+V L +F T + + ++DF + AA +N++ ++
Sbjct: 70 EMRAWPQLSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQ 129
Query: 504 KTRGHIKSPISDDT 545
T G + + IS T
Sbjct: 130 ATNGRLNNTISPGT 143
>03_06_0584 + 34909800-34910261
Length = 153
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 274 PKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYV 152
P + S +L A A Y+ + +ITP G++ F + DD Y+
Sbjct: 42 PSLKASSKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 246 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYV-GNKYT 392
S A+ D GD V + + L+ F E++PD+ ++N +Y+ G+ Y+
Sbjct: 152 SYADTDAGFRTGDTIAVHHILVFLNNWFQEVHPDF--LSNPLYIAGDSYS 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,807
Number of Sequences: 37544
Number of extensions: 306605
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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